RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 TMEM161AQ9NX61 479 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 SLC9A3R1O14745 358 aaPredicted RBP7.59□□□□□ -1.19
SYNE1-213ENST00000448038 ANP32DO95626 131 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 GLP2RO95838 553 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 ACRP10323 421 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 GABRR2P28476 465 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 CHKAP35790 457 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 GJA5P36382 358 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 MGAT5Q09328 741 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 CDCA2Q69YH5 1023 aaPredicted RBP7.59□□□□□ -1.19
SYNE1-213ENST00000448038 PMF1Q6P1K2 205 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 RFX8Q6ZV50 586 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 SZRD1Q7Z422 152 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 SLC26A11Q86WA9 606 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 TFAP2BQ92481 460 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 NDRG1Q92597 394 aaKnown RBP7.59□□□□□ -1.19
SYNE1-213ENST00000448038 CAVIN3Q969G5 261 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 PCED1BQ96HM7 432 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 ARHGAP39Q9C0H5 1083 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 EPN3Q9H201 632 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 C11orf49Q9H6J7 331 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 NPHS2Q9NP85 383 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 hCG_1818297A0A087WSY0 165 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 A0A1W2PQH9 124 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 GNGT2O14610 69 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 CAND2O75155 1236 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 ATP5HO75947 161 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 IGSF6O95976 241 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 ATP4AP20648 1035 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 PLA2G4AP47712 749 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 TMEM63BQ5T3F8 832 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 AGAP9Q5VTM2 703 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 MON1BQ7L1V2 547 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 MDM1Q8TC05 714 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 ARL8AQ96BM9 186 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 FAM136AQ96C01 138 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 RMDN2Q96LZ7 410 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 FAM111AQ96PZ2 611 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 NFKBIZQ9BYH8 718 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 CLPBQ9H078 707 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 TRDMT1O14717 391 aaKnown RBP7.59□□□□□ -1.19
SYNE1-213ENST00000448038 LIASO43766 372 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 USP12O75317 370 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 VPS26AO75436 327 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 STMN1P16949 149 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 ERCC2P18074 760 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 LMO2P25791 158 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 SERPINB8P50452 374 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 NAA25Q14CX7 972 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 VARS2Q5ST30 1063 aaKnown RBP7.59□□□□□ -1.19
SYNE1-213ENST00000448038 BBS12Q6ZW61 710 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 STRADAQ7RTN6 431 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 ADCK2Q7Z695 626 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 LRRC15Q8TF66 581 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 E2F7Q96AV8 911 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 MTBPQ96DY7 904 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 CENPKQ9BS16 269 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 C16orf70Q9BSU1 422 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 C2orf49Q9BVC5 232 aaPredicted RBP7.59□□□□□ -1.19
SYNE1-213ENST00000448038 POLR1EQ9GZS1 481 aaKnown RBP7.59□□□□□ -1.19
SYNE1-213ENST00000448038 RNF39Q9H2S5 420 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 SLC28A3Q9HAS3 691 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 SIX2Q9NPC8 291 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.59□□□□□ -1.19
SYNE1-213ENST00000448038 L3MBTL1Q9Y468 752 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 WDR27A2RRH5 827 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 MYBPHLA2RUH7 354 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 ETS1P14921 441 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 FLT3P36888 993 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 NPY2RP49146 381 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 SLC5A3P53794 718 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 EFTUD2Q15029 972 aaKnown RBP eCLIP7.59□□□□□ -1.19
SYNE1-213ENST00000448038 SNCBQ16143 134 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 PARP6Q2NL67 630 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 ANKRD20A2Q5SQ80 823 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 ANKRD20A1Q5TYW2 823 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 SLC39A4Q6P5W5 647 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 RSPH1Q8WYR4 309 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 FBXL18Q96ME1 805 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 HNRNPABQ99729 332 aaKnown RBP7.59□□□□□ -1.19
SYNE1-213ENST00000448038 PRDM12Q9H4Q4 367 aa7.59□□□□□ -1.19
SYNE1-213ENST00000448038 SIPA1L3O60292 1781 aaPredicted RBP7.59□□□□□ -1.2
SYNE1-213ENST00000448038 A0A0A0MRY4 1105 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 A0A1W2PQ45 241 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 A0A1W2PQY0 241 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 GLRA3O75311 464 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 POLR2EP19388 210 aaKnown RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 WARSP23381 471 aaKnown RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 STARD3Q14849 445 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 CHI3L2Q15782 390 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 BRMS1LQ5PSV4 323 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 ZNF557Q8N988 423 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 SPATA13Q96N96 652 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 TBL1YQ9BQ87 522 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 TSEN34Q9BSV6 310 aaKnown RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 UPF3AQ9H1J1 476 aaKnown RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 ETNK2Q9NVF9 386 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 GMIPQ9P107 970 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 SLC24A2Q9UI40 661 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 ABCA3Q99758 1704 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms