RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 DAPK3O43293 454 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 ATP6V1G1O75348 118 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 IGLV3-25P01717 112 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 CA8P35219 290 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 ALDH1A3P47895 512 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 PGFP49763 221 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 VCPP55072 806 aaKnown RBP8.35□□□□□ -1.07
CCDC39-201ENST00000442201 SCAPQ12770 1279 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 IFT88Q13099 833 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 MTMR3Q13615 1198 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 PABPC1LQ4VXU2 614 aaKnown RBP8.35□□□□□ -1.07
CCDC39-201ENST00000442201 DUPD1Q68J44 220 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 C6orf89Q6UWU4 347 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 PCDH19Q8TAB3 1148 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 SLC35B2Q8TB61 432 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 SEC14L1Q92503 715 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 P3H4Q92791 437 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 FAF2Q96CS3 445 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 RMDN2Q96LZ7 410 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 CSPG4P5Q96PW8 444 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 ZBP1Q9H171 429 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 SAE1Q9UBE0 346 aaPredicted RBP8.35□□□□□ -1.07
CCDC39-201ENST00000442201 NFU1Q9UMS0 254 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 MAGED2Q9UNF1 606 aaPredicted RBP8.35□□□□□ -1.07
CCDC39-201ENST00000442201 NLRC5Q86WI3 1866 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 SRRM3A6NNA2 597 aaPredicted RBP8.35□□□□□ -1.07
CCDC39-201ENST00000442201 BHMG1C9JSJ3 638 aaPredicted RBP8.35□□□□□ -1.07
CCDC39-201ENST00000442201 PRRG1O14668 218 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 MCF2LO15068 1137 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 TEX28O15482 410 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 SEC24AO95486 1093 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 ZFXP17010 805 aaPredicted RBP8.35□□□□□ -1.07
CCDC39-201ENST00000442201 CTNNB1P35222 781 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 BMPR1AP36894 532 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 DRG2P55039 364 aaKnown RBP8.35□□□□□ -1.07
CCDC39-201ENST00000442201 MSANTD2Q6P1R3 559 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 GSTA5Q7RTV2 222 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 TMC7Q7Z402 723 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 GSPT2Q8IYD1 628 aaKnown RBP8.35□□□□□ -1.07
CCDC39-201ENST00000442201 PYROXD2Q8N2H3 581 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 SMYD1Q8NB12 490 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.35□□□□□ -1.07
CCDC39-201ENST00000442201 SERPINB11Q96P15 392 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 TTLL2Q9BWV7 592 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 TKTL2Q9H0I9 626 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 RXFP1Q9HBX9 757 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 OSER1Q9NX31 292 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 NUDT5Q9UKK9 219 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 DRG1Q9Y295 367 aaKnown RBP8.35□□□□□ -1.07
CCDC39-201ENST00000442201 WDR37Q9Y2I8 494 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 YIPF1Q9Y548 306 aa8.35□□□□□ -1.07
CCDC39-201ENST00000442201 LCHNA4D1U4 455 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 SMAPO00193 183 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 E2F6O75461 281 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 CSH1P0DML2 217 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 CSH2P0DML3 217 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 TGM2P21980 687 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 CCR1P32246 355 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 MPP3Q13368 585 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 VEPH1Q14D04 833 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 TRADDQ15628 312 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 TAF12Q16514 161 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 BRMS1LQ5PSV4 323 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 SLC9A4Q6AI14 798 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 DDX42Q86XP3 938 aaKnown RBP eCLIP8.34□□□□□ -1.07
CCDC39-201ENST00000442201 PQLC3Q8N755 202 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 PLD5Q8N7P1 536 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 PHC3Q8NDX5 983 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 FAM76AQ8TAV0 307 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 CASP10Q92851 521 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 MAGEB5Q9BZ81 275 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 PHACTR1Q9C0D0 580 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 TMPRSS4Q9NRS4 437 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 OLA1Q9NTK5 396 aaKnown RBP8.34□□□□□ -1.07
CCDC39-201ENST00000442201 ASIC3Q9UHC3 531 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 SFMBT1Q9UHJ3 866 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 MAFFQ9ULX9 164 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 HPCAL4Q9UM19 191 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 RWDD3Q9Y3V2 267 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 GMEB1Q9Y692 573 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 CREB3O43889 395 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 LILRB3O75022 631 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 PENKP01210 267 aaPredicted RBP8.34□□□□□ -1.07
CCDC39-201ENST00000442201 ITGAVP06756 1048 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 RARGP13631 454 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 GOT1P17174 413 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 ZNF135P52742 658 aaPredicted RBP8.34□□□□□ -1.07
CCDC39-201ENST00000442201 EIF3EP60228 445 aaKnown RBP8.34□□□□□ -1.07
CCDC39-201ENST00000442201 XRCC4Q13426 336 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 EIF4EBP2Q13542 120 aaPredicted RBP8.34□□□□□ -1.07
CCDC39-201ENST00000442201 CUL3Q13618 768 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 NOMO1Q15155 1222 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 OASLQ15646 514 aaKnown RBP8.34□□□□□ -1.07
CCDC39-201ENST00000442201 KCTD19Q17RG1 926 aaPredicted RBP8.34□□□□□ -1.07
CCDC39-201ENST00000442201 RASIP1Q5U651 963 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 EMBQ6PCB8 327 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 TCEAL8Q8IYN2 117 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 CCDC89Q8N998 374 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 PDZD8Q8NEN9 1154 aa8.34□□□□□ -1.07
CCDC39-201ENST00000442201 CAPS2Q9BXY5 557 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms