RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 AGAP2Q99490 1192 aa13.94□□□□□ -0.18
HERPUD1-204ENST00000439977 TXNDC16Q9P2K2 825 aa13.94□□□□□ -0.18
HERPUD1-204ENST00000439977 STX18Q9P2W9 335 aaKnown RBP13.94□□□□□ -0.18
HERPUD1-204ENST00000439977 PACSIN3Q9UKS6 424 aa13.94□□□□□ -0.18
HERPUD1-204ENST00000439977 PPM1HQ9ULR3 514 aa13.94□□□□□ -0.18
HERPUD1-204ENST00000439977 LTBP3Q9NS15 1303 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 ASB14A6NK59 587 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 FAM72CH0Y354 149 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 ITGA2BP08514 1039 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 UBTFL6P0CB48 400 aaPredicted RBP13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 FGF3P11487 239 aaPredicted RBP13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 SAT1P21673 171 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 SARNPP82979 210 aaKnown RBP13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 USP4Q13107 963 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 FBXO47Q5MNV8 452 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 FAM72AQ5TYM5 149 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 FAM72DQ6L9T8 149 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 HFE2Q6ZVN8 426 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 MAVSQ7Z434 540 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 FAM72BQ86X60 149 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 WDR75Q8IWA0 830 aaKnown RBP13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 BEST2Q8NFU1 509 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 OR52K1Q8NGK4 314 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 SH3TC2Q8TF17 1288 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 C11orf84Q9BUA3 381 aaPredicted RBP13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 SNX25Q9H3E2 840 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 UBP1Q9NZI7 540 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 KPNA7A9QM74 516 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 M0QYT0 321 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 AMHP03971 560 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 CD1EP15812 388 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 PTPN9P43378 593 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 NR2C2P49116 596 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 POU5F1BQ06416 359 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 RASSF3Q86WH2 238 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 ZNF567Q8N184 647 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 PLD6Q8N2A8 252 aaKnown RBP13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 PHC3Q8NDX5 983 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 PPTC7Q8NI37 304 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 PYDC1Q8WXC3 89 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 SNX27Q96L92 541 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 MROH8Q9H579 483 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 G3BP2Q9UN86 482 aaKnown RBP13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 RPL26L1Q9UNX3 145 aaKnown RBP13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 PLA2G4CQ9UP65 541 aa13.93□□□□□ -0.18
HERPUD1-204ENST00000439977 CXCL11O14625 94 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 PLIN3O60664 434 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 ZCCHC18P0CG32 403 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 BCAT1P54687 386 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 SOX4Q06945 474 aaPredicted RBP13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 PCLAFQ15004 111 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 IFNLR1Q8IU57 520 aaPredicted RBP13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 ARHGAP24Q8N264 748 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 PPFIBP2Q8ND30 876 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 RNF139Q8WU17 664 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 CENPIQ92674 756 aaPredicted RBP13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 CDKL2Q92772 493 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 LENG1Q96BZ8 264 aaPredicted RBP13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 FAM136AQ96C01 138 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 CDCA5Q96FF9 252 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 FCRL3Q96P31 734 aaPredicted RBP13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 PIDD1Q9HB75 910 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 CPSF2Q9P2I0 782 aaKnown RBP13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 MAP3K7O43318 606 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 ATP9BO43861 1147 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 CIB2O75838 187 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 DGKIO75912 1065 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 TM7SF2O76062 418 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 IL1BP01584 269 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 SERPINA6P08185 405 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 ZFXP17010 805 aaPredicted RBP13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 TPH1P17752 444 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 SERPINB9P50453 376 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 SLC27A1Q6PCB7 646 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 RNF169Q8NCN4 708 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 APOBEC2Q9Y235 224 aaKnown RBP13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 PIN4Q9Y237 131 aaKnown RBP13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 USP3Q9Y6I4 520 aa13.92□□□□□ -0.18
HERPUD1-204ENST00000439977 PROCP04070 461 aa13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 PRKCGP05129 697 aa13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 SKIP12755 728 aa13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 ANPEPP15144 967 aa13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 SMPD1P17405 629 aa13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 GJA5P36382 358 aa13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 NIPAL4Q0D2K0 466 aa13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 PRAMEF19Q5SWL8 479 aa13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 IZUMO2Q6UXV1 221 aa13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 SPNS2Q8IVW8 549 aa13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 DNAAF3Q8N9W5 541 aa13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 TMEM40Q8WWA1 233 aa13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 ATP2A3Q93084 1043 aa13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 OLFM3Q96PB7 478 aa13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 MMADHCQ9H3L0 296 aaPredicted RBP13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 ZNF408Q9H9D4 720 aa13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 FZD10Q9ULW2 581 aa13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 SNX10Q9Y5X0 201 aa13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 SMIM28A0A1B0GU29 152 aa13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 SIN3BO75182 1162 aa13.91□□□□□ -0.18
HERPUD1-204ENST00000439977 SNAI1O95863 264 aaPredicted RBP13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms