RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 FAM131BQ86XD5 332 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 MFN1Q8IWA4 741 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 CCDC117Q8IWD4 279 aaPredicted RBP19.31■□□□□ 0.68
SHH-203ENST00000435425 IL17RCQ8NAC3 791 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 WFDC5Q8TCV5 224 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 ERLEC1Q96DZ1 483 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 PGAP3Q96FM1 320 aaPredicted RBP19.31■□□□□ 0.68
SHH-203ENST00000435425 MCEEQ96PE7 176 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 HHIPQ96QV1 700 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 ANLNQ9NQW6 1124 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 ABCB8Q9NUT2 735 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 MYO1AQ9UBC5 1043 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 SLC27A6Q9Y2P4 619 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 SNX10Q9Y5X0 201 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 HS3ST4Q9Y661 456 aa19.31■□□□□ 0.68
SHH-203ENST00000435425 K7ESF4 209 aa19.3■□□□□ 0.68
SHH-203ENST00000435425 SGK1O00141 431 aa19.3■□□□□ 0.68
SHH-203ENST00000435425 GZMAP12544 262 aa19.3■□□□□ 0.68
SHH-203ENST00000435425 FNTBP49356 437 aa19.3■□□□□ 0.68
SHH-203ENST00000435425 ADKP55263 362 aaKnown RBP19.3■□□□□ 0.68
SHH-203ENST00000435425 RPL7AP62424 266 aaKnown RBP19.3■□□□□ 0.68
SHH-203ENST00000435425 ZNF528Q3MIS6 628 aa19.3■□□□□ 0.68
SHH-203ENST00000435425 ANKS1BQ7Z6G8 1248 aa19.3■□□□□ 0.68
SHH-203ENST00000435425 CIR1Q86X95 450 aaPredicted RBP19.3■□□□□ 0.68
SHH-203ENST00000435425 OR8K1Q8NGG5 319 aa19.3■□□□□ 0.68
SHH-203ENST00000435425 ZNF653Q96CK0 615 aa19.3■□□□□ 0.68
SHH-203ENST00000435425 FAM122AQ96E09 287 aa19.3■□□□□ 0.68
SHH-203ENST00000435425 VCPIP1Q96JH7 1222 aa19.3■□□□□ 0.68
SHH-203ENST00000435425 ACOX2Q99424 681 aa19.3■□□□□ 0.68
SHH-203ENST00000435425 PRMT1Q99873 361 aaKnown RBP19.3■□□□□ 0.68
SHH-203ENST00000435425 IRX2Q9BZI1 471 aaPredicted RBP19.3■□□□□ 0.68
SHH-203ENST00000435425 CIPCQ9C0C6 399 aa19.3■□□□□ 0.68
SHH-203ENST00000435425 ARHGEF38Q9NXL2 777 aa19.3■□□□□ 0.68
SHH-203ENST00000435425 ARHGAP20Q9P2F6 1191 aa19.3■□□□□ 0.68
SHH-203ENST00000435425 CNOT8Q9UFF9 292 aaKnown RBP19.3■□□□□ 0.68
SHH-203ENST00000435425 HCN2Q9UL51 889 aa19.3■□□□□ 0.68
SHH-203ENST00000435425 VANGL2Q9ULK5 521 aa19.3■□□□□ 0.68
SHH-203ENST00000435425 MMP17Q9ULZ9 603 aa19.3■□□□□ 0.68
SHH-203ENST00000435425 PAXBP1Q9Y5B6 917 aa19.3■□□□□ 0.68
SHH-203ENST00000435425 WDFY4Q6ZS81 3184 aa19.3■□□□□ 0.68
SHH-203ENST00000435425 TCRBV5S1A1TA0A578 114 aa19.29■□□□□ 0.68
SHH-203ENST00000435425 H0Y626 953 aa19.29■□□□□ 0.68
SHH-203ENST00000435425 TDGF1P13385 188 aa19.29■□□□□ 0.68
SHH-203ENST00000435425 HLA-FP30511 346 aa19.29■□□□□ 0.68
SHH-203ENST00000435425 NRLP54845 237 aa19.29■□□□□ 0.68
SHH-203ENST00000435425 AUHQ13825 339 aaKnown RBP19.29■□□□□ 0.68
SHH-203ENST00000435425 TSR1Q2NL82 804 aaKnown RBP19.29■□□□□ 0.68
SHH-203ENST00000435425 EOGTQ5NDL2 527 aa19.29■□□□□ 0.68
SHH-203ENST00000435425 RABGAP1LQ5R372 815 aa19.29■□□□□ 0.68
SHH-203ENST00000435425 MPP7Q5T2T1 576 aa19.29■□□□□ 0.68
SHH-203ENST00000435425 FBXL22Q6P050 247 aa19.29■□□□□ 0.68
SHH-203ENST00000435425 CHST9Q7L1S5 443 aa19.29■□□□□ 0.68
SHH-203ENST00000435425 C14orf80Q86SX3 495 aa19.29■□□□□ 0.68
SHH-203ENST00000435425 FAM172AQ8WUF8 416 aa19.29■□□□□ 0.68
SHH-203ENST00000435425 ATRIPQ8WXE1 791 aa19.29■□□□□ 0.68
SHH-203ENST00000435425 IGSF8Q969P0 613 aa19.29■□□□□ 0.68
SHH-203ENST00000435425 RPRD1AQ96P16 312 aaPredicted RBP19.29■□□□□ 0.68
SHH-203ENST00000435425 ZSCAN32Q9NX65 697 aa19.29■□□□□ 0.68
SHH-203ENST00000435425 GGA2Q9UJY4 613 aa19.29■□□□□ 0.68
SHH-203ENST00000435425 STARD13Q9Y3M8 1113 aa19.29■□□□□ 0.68
SHH-203ENST00000435425 A0A087X0T9 212 aa19.28■□□□□ 0.68
SHH-203ENST00000435425 I6L893 689 aaPredicted RBP19.28■□□□□ 0.68
SHH-203ENST00000435425 CCP110O43303 1012 aa19.28■□□□□ 0.68
SHH-203ENST00000435425 LUC7L3O95232 432 aaKnown RBP19.28■□□□□ 0.68
SHH-203ENST00000435425 PAPSS2O95340 614 aaPredicted RBP19.28■□□□□ 0.68
SHH-203ENST00000435425 FAM228BP0C875 321 aa19.28■□□□□ 0.68
SHH-203ENST00000435425 CHRM1P11229 460 aaPredicted RBP19.28■□□□□ 0.68
SHH-203ENST00000435425 PABPC1P11940 636 aaKnown RBP19.28■□□□□ 0.68
SHH-203ENST00000435425 CD70P32970 193 aa19.28■□□□□ 0.68
SHH-203ENST00000435425 EIF4A3P38919 411 aaKnown RBP19.28■□□□□ 0.68
SHH-203ENST00000435425 PTPN9P43378 593 aa19.28■□□□□ 0.68
SHH-203ENST00000435425 MTA1Q13330 715 aa19.28■□□□□ 0.68
SHH-203ENST00000435425 CDH18Q13634 790 aa19.28■□□□□ 0.68
SHH-203ENST00000435425 PPP1R15BQ5SWA1 713 aa19.28■□□□□ 0.68
SHH-203ENST00000435425 SDE2Q6IQ49 451 aa19.28■□□□□ 0.68
SHH-203ENST00000435425 BNIPLQ7Z465 357 aa19.28■□□□□ 0.68
SHH-203ENST00000435425 TRMT11Q7Z4G4 463 aaKnown RBP19.28■□□□□ 0.68
SHH-203ENST00000435425 CHPFQ8IZ52 775 aa19.28■□□□□ 0.68
SHH-203ENST00000435425 UCMAQ8WVF2 138 aa19.28■□□□□ 0.68
SHH-203ENST00000435425 SORCS1Q8WY21 1168 aa19.28■□□□□ 0.68
SHH-203ENST00000435425 PARVAQ9NVD7 372 aa19.28■□□□□ 0.68
SHH-203ENST00000435425 ZNHIT6Q9NWK9 470 aaKnown RBP19.28■□□□□ 0.68
SHH-203ENST00000435425 ELOVL2Q9NXB9 296 aa19.28■□□□□ 0.68
SHH-203ENST00000435425 CACNA2D2Q9NY47 1150 aa19.28■□□□□ 0.68
SHH-203ENST00000435425 FANCMQ8IYD8 2048 aa19.28■□□□□ 0.68
SHH-203ENST00000435425 ADAM23O75077 832 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 MFAP3LO75121 409 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 ENDOD1O94919 500 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 NTSR1P30989 418 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 NUMBP49757 651 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 IRAK1P51617 712 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 LMAN2Q12907 356 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 MAMLD1Q13495 774 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 CRY1Q16526 586 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 HSF5Q4G112 596 aaPredicted RBP19.27■□□□□ 0.68
SHH-203ENST00000435425 FSCBQ5H9T9 825 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 CCDC122Q5T0U0 273 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 TMEM215Q68D42 235 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 SCYL2Q6P3W7 929 aa19.27■□□□□ 0.68
SHH-203ENST00000435425 ZC3H14Q6PJT7 736 aaKnown RBP19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms