RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 SCNM1Q9BWG6 230 aa17.74■□□□□ 0.43
TRIM39-209ENST00000428728 NUCKS1Q9H1E3 243 aaKnown RBP17.74■□□□□ 0.43
TRIM39-209ENST00000428728 DNAAF2Q9NVR5 837 aaKnown RBP17.74■□□□□ 0.43
TRIM39-209ENST00000428728 EIF2B4Q9UI10 523 aaKnown RBP17.74■□□□□ 0.43
TRIM39-209ENST00000428728 WASF3Q9UPY6 502 aa17.74■□□□□ 0.43
TRIM39-209ENST00000428728 NAALADL1Q9UQQ1 740 aa17.74■□□□□ 0.43
TRIM39-209ENST00000428728 UPK3BL1B0FP48 263 aa17.73■□□□□ 0.43
TRIM39-209ENST00000428728 UPK3BL2E5RIL1 263 aa17.73■□□□□ 0.43
TRIM39-209ENST00000428728 IRAK2O43187 625 aa17.73■□□□□ 0.43
TRIM39-209ENST00000428728 SART1O43290 800 aaKnown RBP17.73■□□□□ 0.43
TRIM39-209ENST00000428728 HYAL3O43820 417 aaPredicted RBP17.73■□□□□ 0.43
TRIM39-209ENST00000428728 FGFR1OPO95684 399 aaKnown RBP17.73■□□□□ 0.43
TRIM39-209ENST00000428728 ATP5BP06576 529 aaKnown RBP17.73■□□□□ 0.43
TRIM39-209ENST00000428728 DLDP09622 509 aaKnown RBP17.73■□□□□ 0.43
TRIM39-209ENST00000428728 CD59P13987 128 aa17.73■□□□□ 0.43
TRIM39-209ENST00000428728 GNA15P30679 374 aa17.73■□□□□ 0.43
TRIM39-209ENST00000428728 GPD2P43304 727 aa17.73■□□□□ 0.43
TRIM39-209ENST00000428728 ACADSBP45954 432 aa17.73■□□□□ 0.43
TRIM39-209ENST00000428728 FAM193AP78312 1265 aa17.73■□□□□ 0.43
TRIM39-209ENST00000428728 MPP7Q5T2T1 576 aa17.73■□□□□ 0.43
TRIM39-209ENST00000428728 CARNMT1Q8N4J0 409 aa17.73■□□□□ 0.43
TRIM39-209ENST00000428728 CADM4Q8NFZ8 388 aa17.73■□□□□ 0.43
TRIM39-209ENST00000428728 CAMK1GQ96NX5 476 aa17.73■□□□□ 0.43
TRIM39-209ENST00000428728 MTG2Q9H4K7 406 aa17.73■□□□□ 0.43
TRIM39-209ENST00000428728 ACP6Q9NPH0 428 aa17.73■□□□□ 0.43
TRIM39-209ENST00000428728 CNTN6Q9UQ52 1028 aa17.73■□□□□ 0.43
TRIM39-209ENST00000428728 TLR6Q9Y2C9 796 aa17.73■□□□□ 0.43
TRIM39-209ENST00000428728 METTL12A8MUP2 240 aa17.72■□□□□ 0.43
TRIM39-209ENST00000428728 E5RJQ4 531 aa17.72■□□□□ 0.43
TRIM39-209ENST00000428728 CAPN9O14815 690 aa17.72■□□□□ 0.43
TRIM39-209ENST00000428728 BCAT2O15382 392 aaPredicted RBP17.72■□□□□ 0.43
TRIM39-209ENST00000428728 MED7O43513 233 aa17.72■□□□□ 0.43
TRIM39-209ENST00000428728 GJB3O75712 270 aa17.72■□□□□ 0.43
TRIM39-209ENST00000428728 PROS1P07225 676 aa17.72■□□□□ 0.43
TRIM39-209ENST00000428728 USP8P40818 1118 aa17.72■□□□□ 0.43
TRIM39-209ENST00000428728 APBA1Q02410 837 aa17.72■□□□□ 0.43
TRIM39-209ENST00000428728 NNTQ13423 1086 aa17.72■□□□□ 0.43
TRIM39-209ENST00000428728 CDH18Q13634 790 aa17.72■□□□□ 0.43
TRIM39-209ENST00000428728 CAMK4Q16566 473 aa17.72■□□□□ 0.43
TRIM39-209ENST00000428728 ARHGAP44Q17R89 818 aa17.72■□□□□ 0.43
TRIM39-209ENST00000428728 SYPL2Q5VXT5 272 aa17.72■□□□□ 0.43
TRIM39-209ENST00000428728 CFAP52Q8N1V2 620 aa17.72■□□□□ 0.43
TRIM39-209ENST00000428728 DDX50Q9BQ39 737 aaKnown RBP17.72■□□□□ 0.43
TRIM39-209ENST00000428728 C6orf106Q9H6K1 298 aaPredicted RBP17.72■□□□□ 0.43
TRIM39-209ENST00000428728 PRSS16Q9NQE7 514 aa17.72■□□□□ 0.43
TRIM39-209ENST00000428728 CYTH4Q9UIA0 394 aa17.72■□□□□ 0.43
TRIM39-209ENST00000428728 XPO7Q9UIA9 1087 aaKnown RBP17.72■□□□□ 0.43
TRIM39-209ENST00000428728 NFE2L3Q9Y4A8 694 aa17.72■□□□□ 0.43
TRIM39-209ENST00000428728 PTPRBP23467 1997 aa17.71■□□□□ 0.43
TRIM39-209ENST00000428728 PAPSS1O43252 624 aaPredicted RBP17.71■□□□□ 0.43
TRIM39-209ENST00000428728 SH3BP5O60239 455 aa17.71■□□□□ 0.43
TRIM39-209ENST00000428728 APOEP02649 317 aa17.71■□□□□ 0.43
TRIM39-209ENST00000428728 DNTTP04053 509 aa17.71■□□□□ 0.43
TRIM39-209ENST00000428728 ACSL1P33121 698 aa17.71■□□□□ 0.43
TRIM39-209ENST00000428728 CSKP41240 450 aa17.71■□□□□ 0.43
TRIM39-209ENST00000428728 RPL34P49207 117 aaKnown RBP17.71■□□□□ 0.43
TRIM39-209ENST00000428728 RPS14P62263 151 aaKnown RBP17.71■□□□□ 0.43
TRIM39-209ENST00000428728 MS4A13Q5J8X5 152 aa17.71■□□□□ 0.43
TRIM39-209ENST00000428728 TRIM65Q6PJ69 517 aa17.71■□□□□ 0.43
TRIM39-209ENST00000428728 CHSY1Q86X52 802 aa17.71■□□□□ 0.43
TRIM39-209ENST00000428728 ZNF557Q8N988 423 aaPredicted RBP17.71■□□□□ 0.43
TRIM39-209ENST00000428728 FIBINQ8TAL6 211 aa17.71■□□□□ 0.43
TRIM39-209ENST00000428728 ZNF606Q8WXB4 792 aa17.71■□□□□ 0.43
TRIM39-209ENST00000428728 AZIN2Q96A70 460 aa17.71■□□□□ 0.43
TRIM39-209ENST00000428728 SLC39A13Q96H72 371 aa17.71■□□□□ 0.43
TRIM39-209ENST00000428728 SLC4A5Q9BY07 1137 aa17.71■□□□□ 0.43
TRIM39-209ENST00000428728 IRX2Q9BZI1 471 aaPredicted RBP17.71■□□□□ 0.43
TRIM39-209ENST00000428728 FBRSQ9HAH7 460 aa17.71■□□□□ 0.43
TRIM39-209ENST00000428728 TJP2Q9UDY2 1190 aa17.71■□□□□ 0.43
TRIM39-209ENST00000428728 RWDD2AQ9UIY3 292 aa17.71■□□□□ 0.43
TRIM39-209ENST00000428728 SEMA4FO95754 770 aa17.7■□□□□ 0.42
TRIM39-209ENST00000428728 SLC9A1P19634 815 aa17.7■□□□□ 0.42
TRIM39-209ENST00000428728 ST8SIA6P61647 398 aa17.7■□□□□ 0.42
TRIM39-209ENST00000428728 PITX1P78337 314 aaPredicted RBP17.7■□□□□ 0.42
TRIM39-209ENST00000428728 TTC31Q49AM3 519 aaPredicted RBP17.7■□□□□ 0.42
TRIM39-209ENST00000428728 DCAF6Q58WW2 860 aa17.7■□□□□ 0.42
TRIM39-209ENST00000428728 ZC3H12AQ5D1E8 599 aaKnown RBP17.7■□□□□ 0.42
TRIM39-209ENST00000428728 RAP1GAP2Q684P5 730 aa17.7■□□□□ 0.42
TRIM39-209ENST00000428728 ZNF776Q68DI1 518 aaPredicted RBP17.7■□□□□ 0.42
TRIM39-209ENST00000428728 MMS22LQ6ZRQ5 1243 aa17.7■□□□□ 0.42
TRIM39-209ENST00000428728 ENOSF1Q7L5Y1 443 aa17.7■□□□□ 0.42
TRIM39-209ENST00000428728 PASD1Q8IV76 773 aa17.7■□□□□ 0.42
TRIM39-209ENST00000428728 NAXDQ8IW45 347 aa17.7■□□□□ 0.42
TRIM39-209ENST00000428728 CCDC117Q8IWD4 279 aaPredicted RBP17.7■□□□□ 0.42
TRIM39-209ENST00000428728 LGI2Q8N0V4 545 aa17.7■□□□□ 0.42
TRIM39-209ENST00000428728 LMLNQ96KR4 655 aa17.7■□□□□ 0.42
TRIM39-209ENST00000428728 TRIM62Q9BVG3 475 aa17.7■□□□□ 0.42
TRIM39-209ENST00000428728 ZDHHC5Q9C0B5 715 aa17.7■□□□□ 0.42
TRIM39-209ENST00000428728 IL21RQ9HBE5 538 aa17.7■□□□□ 0.42
TRIM39-209ENST00000428728 KIAA1468Q9P260 1216 aa17.7■□□□□ 0.42
TRIM39-209ENST00000428728 KLK13Q9UKR3 277 aa17.7■□□□□ 0.42
TRIM39-209ENST00000428728 INTS6Q9UL03 887 aaKnown RBP17.7■□□□□ 0.42
TRIM39-209ENST00000428728 SLCO1B1Q9Y6L6 691 aa17.7■□□□□ 0.42
TRIM39-209ENST00000428728 FRYQ5TBA9 3013 aa17.69■□□□□ 0.42
TRIM39-209ENST00000428728 SYNJ2BP-COX16A0A087WUM0 186 aa17.69■□□□□ 0.42
TRIM39-209ENST00000428728 BECN2A8MW95 431 aa17.69■□□□□ 0.42
TRIM39-209ENST00000428728 LUC7L3O95232 432 aaKnown RBP17.69■□□□□ 0.42
TRIM39-209ENST00000428728 TRUB2O95900 331 aaKnown RBP17.69■□□□□ 0.42
TRIM39-209ENST00000428728 NUMBP49757 651 aa17.69■□□□□ 0.42
TRIM39-209ENST00000428728 SLC14A1Q13336 389 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms