RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 F5H5T6 163 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 H7C0C1 242 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 I6L893 689 aaPredicted RBP17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 RAD51CO43502 376 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 LIASO43766 372 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 ACSL4O60488 711 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 MCM3P25205 808 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 ATP5OP48047 213 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 NR2C2P49116 596 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 KCNQ1P51787 676 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 VCPP55072 806 aaKnown RBP17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 NRG1Q02297 640 aaPredicted RBP17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 DPYSQ14117 519 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 TCEAL5Q5H9L2 206 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 MS4A13Q5J8X5 152 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 RARS2Q5T160 578 aaKnown RBP17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 PIK3R6Q5UE93 754 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 RAP1GAP2Q684P5 730 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 TMC5Q6UXY8 1006 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 DDX42Q86XP3 938 aaKnown RBP eCLIP17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 ZDHHC14Q8IZN3 488 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 PLD5Q8N7P1 536 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 ATL2Q8NHH9 583 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 SHKBP1Q8TBC3 707 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 FERMT1Q9BQL6 677 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 KLF16Q9BXK1 252 aaPredicted RBP17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 RNF38Q9H0F5 515 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 RAB17Q9H0T7 212 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 TASP1Q9H6P5 420 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 PCYOX1Q9UHG3 505 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 XPO7Q9UIA9 1087 aaKnown RBP17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 VANGL2Q9ULK5 521 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 UTP11Q9Y3A2 253 aaKnown RBP17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 MRPS23Q9Y3D9 190 aaKnown RBP17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 SH3BP1Q9Y3L3 701 aa17.67■□□□□ 0.42
CCDC28B-202ENST00000421922 TARSL2A2RTX5 802 aaKnown RBP17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 STC2O76061 302 aa17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 HEXIM1O94992 359 aaKnown RBP17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 ERCC2P18074 760 aa17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 MLLT6P55198 1093 aaPredicted RBP17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 AUHQ13825 339 aaKnown RBP17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 NOMO1Q15155 1222 aa17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 TEAD2Q15562 447 aa17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 NCBP2-AS2Q69YL0 99 aa17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 DRICH1Q6PGQ1 229 aaPredicted RBP17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 DARS2Q6PI48 645 aaKnown RBP17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 NPNTQ6UXI9 565 aa17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 SYDE1Q6ZW31 735 aaPredicted RBP17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 DENND1CQ8IV53 801 aa17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 C12orf76Q8N812 135 aaPredicted RBP17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 RPRD1AQ96P16 312 aaPredicted RBP17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 CYP2S1Q96SQ9 504 aa17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 GKN1Q9NS71 199 aa17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 LMCD1Q9NZU5 365 aa17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 DNPEPQ9ULA0 475 aa17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 CHD9Q3L8U1 2897 aa17.66■□□□□ 0.42
CCDC28B-202ENST00000421922 TYW5A2RUC4 315 aaKnown RBP17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 SOBPA7XYQ1 873 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 SGK1O00141 431 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 PPP1R12AO14974 1030 aaPredicted RBP17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 TTI1O43156 1089 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 LATS1O95835 1130 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 OLFM2O95897 454 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 TUBBP07437 444 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 PECAM1P16284 738 aaPredicted RBP17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 TACR2P21452 398 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 KCNJ1P48048 391 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 SLC7A9P82251 487 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 MRPS25P82663 173 aaKnown RBP17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 RBM10P98175 930 aaKnown RBP17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 RABGAP1LQ5R372 815 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 TTC27Q6P3X3 843 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 JAMLQ86YT9 394 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 CDKL3Q8IVW4 592 aaPredicted RBP17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 EFHBQ8N7U6 833 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 RSAD2Q8WXG1 361 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 RUBCNQ92622 972 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 NKD2Q969F2 451 aaPredicted RBP17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 AZIN2Q96A70 460 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 ZNF707Q96C28 371 aaPredicted RBP17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 TCEAL4Q96EI5 215 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 SLC22A12Q96S37 553 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 ZYG11BQ9C0D3 744 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 PRDM12Q9H4Q4 367 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 SAE1Q9UBE0 346 aaPredicted RBP17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 ZNF510Q9Y2H8 683 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 RAD54BQ9Y620 910 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 LAMA2P24043 3122 aaKnown RBP17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 DOCK6Q96HP0 2047 aa17.65■□□□□ 0.42
CCDC28B-202ENST00000421922 DCLK1O15075 740 aa17.64■□□□□ 0.42
CCDC28B-202ENST00000421922 MFSD11O43934 449 aa17.64■□□□□ 0.42
CCDC28B-202ENST00000421922 ZNF189O75820 626 aaPredicted RBP17.64■□□□□ 0.42
CCDC28B-202ENST00000421922 RBP3P10745 1247 aa17.64■□□□□ 0.42
CCDC28B-202ENST00000421922 CCR2P41597 374 aa17.64■□□□□ 0.42
CCDC28B-202ENST00000421922 NTHL1P78549 312 aa17.64■□□□□ 0.42
CCDC28B-202ENST00000421922 SLC7A5Q01650 507 aa17.64■□□□□ 0.42
CCDC28B-202ENST00000421922 HYAL1Q12794 435 aa17.64■□□□□ 0.42
CCDC28B-202ENST00000421922 PAFAH1B3Q15102 231 aaKnown RBP17.64■□□□□ 0.42
CCDC28B-202ENST00000421922 STXBP5Q5T5C0 1151 aa17.64■□□□□ 0.42
CCDC28B-202ENST00000421922 ZC3H18Q86VM9 953 aaKnown RBP17.64■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms