RNA–Protein interactions for RNA: ENST00000418107.2

HLA-DMB-258, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

APPRIS P1 BASIC

Gene HLA-DMB, Length 1,397 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-258ENST00000418107 NUP93Q8N1F7 819 aa13.66□□□□□ -0.22
HLA-DMB-258ENST00000418107 SCAMP5Q8TAC9 235 aa13.66□□□□□ -0.22
HLA-DMB-258ENST00000418107 C2orf15Q8WU43 125 aaKnown RBP13.66□□□□□ -0.22
HLA-DMB-258ENST00000418107 RAPGEF5Q92565 580 aa13.66□□□□□ -0.22
HLA-DMB-258ENST00000418107 C8orf48Q96LL4 319 aa13.66□□□□□ -0.22
HLA-DMB-258ENST00000418107 RUNDC3BQ96NL0 473 aa13.66□□□□□ -0.22
HLA-DMB-258ENST00000418107 ASB16Q96NS5 453 aa13.66□□□□□ -0.22
HLA-DMB-258ENST00000418107 SEPT5Q99719 369 aaPredicted RBP13.66□□□□□ -0.22
HLA-DMB-258ENST00000418107 RTKNQ9BST9 563 aa13.66□□□□□ -0.22
HLA-DMB-258ENST00000418107 TRMT61BQ9BVS5 477 aaKnown RBP13.66□□□□□ -0.22
HLA-DMB-258ENST00000418107 CALN1Q9BXU9 219 aa13.66□□□□□ -0.22
HLA-DMB-258ENST00000418107 HOMER3Q9NSC5 361 aa13.66□□□□□ -0.22
HLA-DMB-258ENST00000418107 SLC27A5Q9Y2P5 690 aa13.66□□□□□ -0.22
HLA-DMB-258ENST00000418107 INSL5Q9Y5Q6 135 aa13.66□□□□□ -0.22
HLA-DMB-258ENST00000418107 TCRBV7S2A1N4TA0A589 114 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 MTMR11A4FU01 709 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 ZNF197O14709 1029 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 RAD51CO43502 376 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 HEXIM1O94992 359 aaKnown RBP13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 KRT10P13645 584 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 ATF2P15336 505 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 GDI1P31150 447 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 CHRNA3P32297 505 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 SLC5A3P53794 718 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 RPL10AP62906 217 aaKnown RBP13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 DEUP1Q05D60 604 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 NME3Q13232 169 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 SNX1Q13596 522 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 RAB6CQ53S08 254 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 VITQ6UXI7 678 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 RNF19BQ6ZMZ0 732 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 SND1Q7KZF4 910 aaKnown RBP eCLIP13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 STRADAQ7RTN6 431 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 IFT20Q8IY31 132 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 HS6ST3Q8IZP7 471 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 C1orf54Q8WWF1 131 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 FAM3CQ92520 227 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 ANKRD7Q92527 254 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 EDEM1Q92611 657 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 IRF7Q92985 503 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 ZSWIM3Q96MP5 696 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 SLC2A13Q96QE2 648 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 PNKPQ96T60 521 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 RAB6CQ9H0N0 254 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 FBXO44Q9H4M3 255 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 FAM204AQ9H8W3 233 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 LMAN1LQ9HAT1 526 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 ZNF334Q9HCZ1 680 aaPredicted RBP13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 RRN3Q9NYV6 651 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 STIM2Q9P246 746 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 RASAL2Q9UJF2 1139 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 RAB23Q9ULC3 237 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 NAALADL1Q9UQQ1 740 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 PIAS3Q9Y6X2 628 aa13.65□□□□□ -0.22
HLA-DMB-258ENST00000418107 hCG_1818297A0A087WSY0 165 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 RTN3O95197 1032 aaPredicted RBP13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 GJA1P17302 382 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 PSMC3P17980 439 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 TFE3P19532 575 aaPredicted RBP13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 GBP1P32455 592 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 VIPR2P41587 438 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 GPR15P49685 360 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 NRLP54845 237 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 HDAC4P56524 1084 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 GUCY2DQ02846 1103 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 DUSP4Q13115 394 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 BRD3Q15059 726 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 PDK2Q15119 407 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 ERMARDQ5T6L9 678 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 SYPL2Q5VXT5 272 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 BSPRYQ5W0U4 402 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 PM20D1Q6GTS8 502 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 LAIR1Q6GTX8 287 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 PRR23BQ6ZRT6 265 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 SCML4Q8N228 414 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 PRELID2Q8N945 189 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 TEKT4Q8WW24 435 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 CENPIQ92674 756 aaPredicted RBP13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 SMARCD2Q92925 531 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 RNF34Q969K3 372 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 PEBP4Q96S96 227 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 SNRNP25Q9BV90 132 aaKnown RBP13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 DHX35Q9H5Z1 703 aaKnown RBP13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 GPATCH2LQ9NWQ4 482 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 AMACRQ9UHK6 382 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 COL4A2P08572 1712 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 ZFHX4Q86UP3 3567 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 CHD8Q9HCK8 2581 aa13.64□□□□□ -0.23
HLA-DMB-258ENST00000418107 MOSPD3O75425 235 aa13.63□□□□□ -0.23
HLA-DMB-258ENST00000418107 HAPLN1P10915 354 aaPredicted RBP13.63□□□□□ -0.23
HLA-DMB-258ENST00000418107 MYL4P12829 197 aa13.63□□□□□ -0.23
HLA-DMB-258ENST00000418107 YWHAQP27348 245 aa13.63□□□□□ -0.23
HLA-DMB-258ENST00000418107 PTPN7P35236 360 aa13.63□□□□□ -0.23
HLA-DMB-258ENST00000418107 RDXP35241 583 aaKnown RBP13.63□□□□□ -0.23
HLA-DMB-258ENST00000418107 COILP38432 576 aaPredicted RBP13.63□□□□□ -0.23
HLA-DMB-258ENST00000418107 CDKN2BP42772 138 aa13.63□□□□□ -0.23
HLA-DMB-258ENST00000418107 CCR3P51677 355 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms