RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 WFDC5Q8TCV5 224 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 ARHGEF26Q96DR7 871 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 TMA16Q96EY4 203 aaKnown RBP12.92□□□□□ -0.34
SKA1-203ENST00000417656 TRIM7Q9C029 511 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 WDCPQ9H6R7 721 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 NHEJ1Q9H9Q4 299 aaPredicted RBP12.92□□□□□ -0.34
SKA1-203ENST00000417656 SPATA6Q9NWH7 488 aaPredicted RBP12.92□□□□□ -0.34
SKA1-203ENST00000417656 STIM2Q9P246 746 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 SLC12A6Q9UHW9 1150 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 PAXBP1Q9Y5B6 917 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 SNX10Q9Y5X0 201 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 HS3ST4Q9Y661 456 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 SCINQ9Y6U3 715 aa12.92□□□□□ -0.34
SKA1-203ENST00000417656 MUC22E2RYF6 1773 aaPredicted RBP12.92□□□□□ -0.34
SKA1-203ENST00000417656 TYW5A2RUC4 315 aaKnown RBP12.91□□□□□ -0.34
SKA1-203ENST00000417656 K7EQS6 105 aa12.91□□□□□ -0.34
SKA1-203ENST00000417656 ENDOD1O94919 500 aa12.91□□□□□ -0.34
SKA1-203ENST00000417656 PSMA2P25787 234 aa12.91□□□□□ -0.34
SKA1-203ENST00000417656 GRIA2P42262 883 aa12.91□□□□□ -0.34
SKA1-203ENST00000417656 IRAK1P51617 712 aa12.91□□□□□ -0.34
SKA1-203ENST00000417656 GALCP54803 685 aa12.91□□□□□ -0.34
SKA1-203ENST00000417656 HDAC4P56524 1084 aa12.91□□□□□ -0.34
SKA1-203ENST00000417656 MTAPQ13126 283 aa12.91□□□□□ -0.34
SKA1-203ENST00000417656 FBXO43Q4G163 708 aa12.91□□□□□ -0.34
SKA1-203ENST00000417656 C10orf76Q5T2E6 689 aa12.91□□□□□ -0.34
SKA1-203ENST00000417656 CIR1Q86X95 450 aaPredicted RBP12.91□□□□□ -0.34
SKA1-203ENST00000417656 CFAP52Q8N1V2 620 aa12.91□□□□□ -0.34
SKA1-203ENST00000417656 SPC24Q8NBT2 197 aa12.91□□□□□ -0.34
SKA1-203ENST00000417656 CENPIQ92674 756 aaPredicted RBP12.91□□□□□ -0.34
SKA1-203ENST00000417656 CCDC42Q96M95 316 aa12.91□□□□□ -0.34
SKA1-203ENST00000417656 CNPY3Q9BT09 278 aa12.91□□□□□ -0.34
SKA1-203ENST00000417656 PACSIN1Q9BY11 444 aa12.91□□□□□ -0.34
SKA1-203ENST00000417656 SIK2Q9H0K1 926 aa12.91□□□□□ -0.34
SKA1-203ENST00000417656 FBXO10Q9UK96 956 aa12.91□□□□□ -0.34
SKA1-203ENST00000417656 VANGL2Q9ULK5 521 aa12.91□□□□□ -0.34
SKA1-203ENST00000417656 ATG2BQ96BY7 2078 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 TBC1D3BA6NDS4 549 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 TMEM191CA6NGB0 347 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 LUC7L3O95232 432 aaKnown RBP12.9□□□□□ -0.34
SKA1-203ENST00000417656 CISD3P0C7P0 127 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 CHRM1P11229 460 aaPredicted RBP12.9□□□□□ -0.34
SKA1-203ENST00000417656 MTA1Q13330 715 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 AUHQ13825 339 aaKnown RBP12.9□□□□□ -0.34
SKA1-203ENST00000417656 GEN1Q17RS7 908 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 RNF43Q68DV7 783 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 FBXL22Q6P050 247 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 ANKS1BQ7Z6G8 1248 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 C14orf80Q86SX3 495 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 MFN1Q8IWA4 741 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 SYNPOQ8N3V7 929 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 CCDC185Q8N715 623 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 PRSS33Q8NF86 280 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 RPLP0P6Q8NHW5 317 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 IGSF8Q969P0 613 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 RPRD1AQ96P16 312 aaPredicted RBP12.9□□□□□ -0.34
SKA1-203ENST00000417656 IER2Q9BTL4 223 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 NUP85Q9BW27 656 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 IRX2Q9BZI1 471 aaPredicted RBP12.9□□□□□ -0.34
SKA1-203ENST00000417656 MRPL47Q9HD33 250 aaKnown RBP12.9□□□□□ -0.34
SKA1-203ENST00000417656 ZDHHC4Q9NPG8 344 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 C2orf42Q9NWW7 574 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 RAPGEFL1Q9UHV5 662 aa12.9□□□□□ -0.34
SKA1-203ENST00000417656 PRRT4C9JH25 899 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 CYP1A2P05177 515 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 DESP17661 470 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 HLA-FP30511 346 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 SATB1Q01826 763 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 CDH18Q13634 790 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 PREPLQ4J6C6 727 aaPredicted RBP12.89□□□□□ -0.35
SKA1-203ENST00000417656 C2orf27AQ580R0 203 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 RABGAP1LQ5R372 815 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 MPP7Q5T2T1 576 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 EMC10Q5UCC4 262 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.89□□□□□ -0.35
SKA1-203ENST00000417656 C1orf210Q8IVY1 113 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 ZNF683Q8IZ20 524 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 CARNMT1Q8N4J0 409 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 USP33Q8TEY7 942 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 FNIP1Q8TF40 1166 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 PANX2Q96RD6 677 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 SLC2A11Q9BYW1 496 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 ABCB8Q9NUT2 735 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 POLR3BQ9NW08 1133 aaPredicted RBP12.89□□□□□ -0.35
SKA1-203ENST00000417656 TMEM51Q9NW97 253 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 SLC27A6Q9Y2P4 619 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 HCN4Q9Y3Q4 1203 aa12.89□□□□□ -0.35
SKA1-203ENST00000417656 A0A1B0GVM2 712 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 TCAF2A6NFQ2 919 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 SOWAHDA6NJG2 315 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 LAMTOR5O43504 91 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 H2AFZP0C0S5 128 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 PABPC1P11940 636 aaKnown RBP12.88□□□□□ -0.35
SKA1-203ENST00000417656 FECHP22830 423 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 CD70P32970 193 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 ADRA1BP35368 520 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 TNFRSF4P43489 277 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 KIR2DL1P43626 348 aaPredicted RBP12.88□□□□□ -0.35
SKA1-203ENST00000417656 LMAN2Q12907 356 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 ANGPT1Q15389 498 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 ARL13BQ3SXY8 428 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms