RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 SP2Q02086 613 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 IFT88Q13099 833 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 MTM1Q13496 603 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 PLEKHN1Q494U1 663 aaPredicted RBP2.77□□□□□ -1.97
MCF2-204ENST00000414978 MMEL1Q495T6 779 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 PREPLQ4J6C6 727 aaPredicted RBP2.77□□□□□ -1.97
MCF2-204ENST00000414978 DPY19L3Q6ZPD9 716 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 ZSCAN2Q7Z7L9 614 aaPredicted RBP2.77□□□□□ -1.97
MCF2-204ENST00000414978 FAM90A1Q86YD7 464 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 YAF2Q8IY57 180 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 FRMD1Q8N878 549 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 CNBD1Q8NA66 436 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 FNIP1Q8TF40 1166 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 METTL22Q9BUU2 404 aaPredicted RBP2.77□□□□□ -1.97
MCF2-204ENST00000414978 GLIS2Q9BZE0 524 aaPredicted RBP2.77□□□□□ -1.97
MCF2-204ENST00000414978 ADGRE2Q9UHX3 823 aa2.77□□□□□ -1.97
MCF2-204ENST00000414978 DOCK2Q92608 1830 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 SPEF2Q9C093 1822 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 LOC102723971A0A1B0GUV8 181 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 TRIM64A6NGJ6 449 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 TRIM64BA6NI03 449 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 TAF5LO75529 589 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 BEST1O76090 585 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 IPO13O94829 963 aaKnown RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 CYBBP04839 570 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 ARP10275 920 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 MYCLP12524 364 aaPredicted RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 C6P13671 934 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 BMPR1AP36894 532 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 CPT1AP50416 773 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 AFF3P51826 1226 aaKnown RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 BOP1Q14137 746 aaKnown RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 LAPTM4AQ15012 233 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 PCOLCEQ15113 449 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 PLEKHO1Q53GL0 409 aaPredicted RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 PARP10Q53GL7 1025 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 TBC1D9BQ66K14 1250 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 IL27RAQ6UWB1 636 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 PRR23CQ6ZRP0 262 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 CCDC170Q8IYT3 715 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 VPS52Q8N1B4 723 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 OR6J1Q8NGC5 347 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 RUFY2Q8WXA3 655 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 JAKMIP2Q96AA8 810 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 NMD3Q96D46 503 aaKnown RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 DACH2Q96NX9 599 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 WDCPQ9H6R7 721 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 SLC13A4Q9UKG4 626 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 RPAP1Q9BWH6 1393 aaPredicted RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 GPR75-ASB3A0A0A6YYF3 556 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 MTSS1O43312 755 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 TBX10O75333 385 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 SEC24DO94855 1032 aaPredicted RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 OR2C1O95371 312 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 EGR1P18146 543 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 CTNNA1P35221 906 aaKnown RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 SLC6A11P48066 632 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 CDC16Q13042 620 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 TARBP2Q15633 366 aaKnown RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 ZIK1Q3SY52 487 aaPredicted RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 CD300EQ496F6 205 aaPredicted RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 ARHGAP40Q5TG30 622 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 PAQR3Q6TCH7 311 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 TMEM108Q6UXF1 575 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 CLEC17AQ6ZS10 378 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 SLC44A2Q8IWA5 706 aaPredicted RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 DIS3L2Q8IYB7 885 aaKnown RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 BCL6BQ8N143 479 aaPredicted RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 MRPS27Q92552 414 aaKnown RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 NACC1Q96RE7 527 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 PIP5K1AQ99755 562 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 ZSWIM1Q9BR11 485 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 C1QTNF1Q9BXJ1 281 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 ABHD16BQ9H3Z7 469 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 DBNDD1Q9H9R9 158 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 EPB41L4AQ9HCS5 686 aaPredicted RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 MKLN1Q9UL63 735 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 ANGEL1Q9UNK9 670 aaKnown RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 PLXNA3P51805 1871 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 GBF1Q92538 1859 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 A0A0G2JNJ9 132 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 A0A1W2PR48 441 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 A8MXE2 369 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 PCDH17O14917 1159 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 WFS1O76024 890 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 LTA4HP09960 611 aaKnown RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 PIM1P11309 404 aaPredicted RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 LYL1P12980 280 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 IDEP14735 1019 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 SSTR4P31391 388 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 MLH1P40692 756 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 PRKCIP41743 596 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 ZNF134P52741 427 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 PTTG1IPP53801 180 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 MLLT6P55198 1093 aaPredicted RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 ITGA1P56199 1179 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 RPS3AP61247 264 aaKnown RBP2.76□□□□□ -1.97
MCF2-204ENST00000414978 KIAA2012Q0VF49 1180 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 WTAPQ15007 396 aa2.76□□□□□ -1.97
MCF2-204ENST00000414978 BTN2A1Q7KYR7 527 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms