RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ZNF135P52742 658 aaPredicted RBP7.04□□□□□ -1.28
USP40-202ENST00000409945 BEX3Q00994 111 aa7.04□□□□□ -1.28
USP40-202ENST00000409945 MORC3Q14149 939 aa7.04□□□□□ -1.28
USP40-202ENST00000409945 NEDD9Q14511 834 aa7.04□□□□□ -1.28
USP40-202ENST00000409945 PGM5Q15124 567 aa7.04□□□□□ -1.28
USP40-202ENST00000409945 FAM209BQ5JX69 171 aa7.04□□□□□ -1.28
USP40-202ENST00000409945 ATXN7L2Q5T6C5 722 aaPredicted RBP7.04□□□□□ -1.28
USP40-202ENST00000409945 HIBCHQ6NVY1 386 aaPredicted RBP7.04□□□□□ -1.28
USP40-202ENST00000409945 MED25Q71SY5 747 aa7.04□□□□□ -1.28
USP40-202ENST00000409945 RAB11FIP4Q86YS3 637 aa7.04□□□□□ -1.28
USP40-202ENST00000409945 TBC1D5Q92609 795 aa7.04□□□□□ -1.28
USP40-202ENST00000409945 PACSIN1Q9BY11 444 aa7.04□□□□□ -1.28
USP40-202ENST00000409945 BTBD1Q9H0C5 482 aa7.04□□□□□ -1.28
USP40-202ENST00000409945 C6orf50Q9HD87 102 aa7.04□□□□□ -1.28
USP40-202ENST00000409945 PLCB1Q9NQ66 1216 aa7.04□□□□□ -1.28
USP40-202ENST00000409945 PDRG1Q9NUG6 133 aa7.04□□□□□ -1.28
USP40-202ENST00000409945 BAZ2BQ9UIF8 2168 aaKnown RBP7.04□□□□□ -1.28
USP40-202ENST00000409945 ABHD14A-ACY1A0A1B0GW23 586 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 DRGXA6NNA5 263 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 PJA2O43164 708 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 FIBPO43427 364 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 HAUS5O94927 633 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 UNC5CO95185 931 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 STT3AP46977 705 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 TLE2Q04725 743 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 ITGA7Q13683 1181 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 BOP1Q14137 746 aaKnown RBP7.03□□□□□ -1.28
USP40-202ENST00000409945 CXCL17Q6UXB2 119 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 Q6ZRM9 215 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 DOK3Q7L591 496 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 ANKRD33Q7Z3H0 272 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 PDPRQ8NCN5 879 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 OR56A3Q8NH54 315 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 ZNF274Q96GC6 653 aaPredicted RBP7.03□□□□□ -1.28
USP40-202ENST00000409945 MTIF3Q9H2K0 278 aaKnown RBP7.03□□□□□ -1.28
USP40-202ENST00000409945 BRD9Q9H8M2 597 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 ZFR2Q9UPR6 939 aaKnown RBP7.03□□□□□ -1.28
USP40-202ENST00000409945 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.03□□□□□ -1.28
USP40-202ENST00000409945 PCDHGB2Q9Y5G2 931 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 ASTN1O14525 1302 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 SMCO2A6NFE2 343 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 TEX33O43247 280 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 KIF20AO95235 890 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 SCG2P13521 617 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 MAGEA10P43363 369 aaPredicted RBP7.03□□□□□ -1.28
USP40-202ENST00000409945 TOB1P50616 345 aaPredicted RBP7.03□□□□□ -1.28
USP40-202ENST00000409945 RABGGTBP53611 331 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 SLC13A2Q13183 592 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 TDHQ8IZJ6 230 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 TMEM199Q8N511 208 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 TBC1D15Q8TC07 691 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 ST8SIA2Q92186 375 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 RNF26Q9BY78 433 aaPredicted RBP7.03□□□□□ -1.28
USP40-202ENST00000409945 DPH1Q9BZG8 443 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 TINAGL1Q9GZM7 467 aaPredicted RBP7.03□□□□□ -1.28
USP40-202ENST00000409945 RIC8AQ9NPQ8 531 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 BARHL2Q9NY43 387 aa7.03□□□□□ -1.28
USP40-202ENST00000409945 MYADML2A6NDP7 307 aa7.02□□□□□ -1.29
USP40-202ENST00000409945 DBX1A6NMT0 343 aa7.02□□□□□ -1.29
USP40-202ENST00000409945 ZNF185O15231 689 aa7.02□□□□□ -1.29
USP40-202ENST00000409945 PPFIA4O75335 1185 aa7.02□□□□□ -1.29
USP40-202ENST00000409945 MTHFD1P11586 935 aaKnown RBP7.02□□□□□ -1.29
USP40-202ENST00000409945 CPA1P15085 419 aa7.02□□□□□ -1.29
USP40-202ENST00000409945 KCNJ5P48544 419 aa7.02□□□□□ -1.29
USP40-202ENST00000409945 PPIGQ13427 754 aaKnown RBP eCLIP7.02□□□□□ -1.291e-6■■□□□ 12.8
USP40-202ENST00000409945 PFKFB3Q16875 520 aaPredicted RBP7.02□□□□□ -1.29
USP40-202ENST00000409945 LY6KQ17RY6 165 aa7.02□□□□□ -1.29
USP40-202ENST00000409945 NFRKBQ6P4R8 1299 aa7.02□□□□□ -1.29
USP40-202ENST00000409945 C1orf228Q6PIY5 440 aa7.02□□□□□ -1.29
USP40-202ENST00000409945 USP17L6PQ6QN14 398 aa7.02□□□□□ -1.29
USP40-202ENST00000409945 PPTC7Q8NI37 304 aa7.02□□□□□ -1.29
USP40-202ENST00000409945 WASF1Q92558 559 aa7.02□□□□□ -1.29
USP40-202ENST00000409945 C18orf8Q96DM3 657 aa7.02□□□□□ -1.29
USP40-202ENST00000409945 SPATA33Q96N06 139 aa7.02□□□□□ -1.29
USP40-202ENST00000409945 GDF15Q99988 308 aa7.02□□□□□ -1.29
USP40-202ENST00000409945 CRB3Q9BUF7 120 aa7.02□□□□□ -1.29
USP40-202ENST00000409945 SLC26A6Q9BXS9 759 aa7.02□□□□□ -1.29
USP40-202ENST00000409945 AGXT2Q9BYV1 514 aa7.02□□□□□ -1.29
USP40-202ENST00000409945 ZNF215Q9UL58 517 aaPredicted RBP7.02□□□□□ -1.29
USP40-202ENST00000409945 LRRC37A2A6NM11 1700 aa7.02□□□□□ -1.29
USP40-202ENST00000409945 hCG_1642624A0A1W2PR95 340 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 M0QYG6 137 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 MEIS2O14770 477 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 KIAA0355O15063 1070 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 DEXIO95424 95 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 GGPS1O95749 300 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 IFNAR1P17181 557 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 PDIA3P30101 505 aaKnown RBP7.01□□□□□ -1.29
USP40-202ENST00000409945 UCP3P55916 312 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 FPGSQ05932 587 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 STK3Q13188 491 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 BFSP2Q13515 415 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 Q6ZSN1 163 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 ZNF808Q8N4W9 903 aaPredicted RBP7.01□□□□□ -1.29
USP40-202ENST00000409945 CCDC33Q8N5R6 958 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 SLC17A8Q8NDX2 589 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 MDGA1Q8NFP4 955 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 AFG1LQ8WV93 481 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 SENP7Q9BQF6 1050 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 SDF4Q9BRK5 362 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms