RNA–Protein interactions for RNA: ENST00000403408.2

SPTLC1P3-201, Transcript of serine palmitoyltransferase long chain base subunit 1 pseudogene 3, humanhuman

BASIC

Gene SPTLC1P3, Length 259 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1P3-201ENST00000403408 COL27A1Q8IZC6 1860 aaPredicted RBP12.41□□□□□ -0.42
SPTLC1P3-201ENST00000403408 DCBLD1Q8N8Z6 715 aa12.41□□□□□ -0.42
SPTLC1P3-201ENST00000403408 RFFLQ8WZ73 363 aa12.41□□□□□ -0.42
SPTLC1P3-201ENST00000403408 NAF1Q96HR8 494 aaKnown RBP12.41□□□□□ -0.42
SPTLC1P3-201ENST00000403408 HIC2Q96JB3 615 aa12.41□□□□□ -0.42
SPTLC1P3-201ENST00000403408 NT5C1AQ9BXI3 368 aa12.41□□□□□ -0.42
SPTLC1P3-201ENST00000403408 FBXL12Q9NXK8 326 aa12.41□□□□□ -0.42
SPTLC1P3-201ENST00000403408 PPP4R2Q9NY27 417 aa12.41□□□□□ -0.42
SPTLC1P3-201ENST00000403408 TFIP11Q9UBB9 837 aaKnown RBP12.41□□□□□ -0.42
SPTLC1P3-201ENST00000403408 SFMBT1Q9UHJ3 866 aa12.41□□□□□ -0.42
SPTLC1P3-201ENST00000403408 GGA2Q9UJY4 613 aa12.41□□□□□ -0.42
SPTLC1P3-201ENST00000403408 STOML2Q9UJZ1 356 aa12.41□□□□□ -0.42
SPTLC1P3-201ENST00000403408 USP9XQ93008 2570 aaPredicted RBP12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 A0A1W2PP55 124 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 ERVH48-1M5A8F1 160 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 TRIM38O00635 465 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 KLRC4O43908 158 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 DFNA5O60443 496 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 CLSTN1O94985 981 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 CYBBP04839 570 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 DLDP09622 509 aaKnown RBP12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 SYT1P21579 422 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 GLDCP23378 1020 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 NASPP49321 788 aaPredicted RBP12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 METAP1P53582 386 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 AP3M2P53677 418 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 YWHAGP61981 247 aaKnown RBP eCLIP12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 PPP2CBP62714 309 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 PPP2CAP67775 309 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 STK4Q13043 487 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 INAVAQ3KP66 663 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 MPPE1Q53F39 396 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 ZNF394Q53GI3 561 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 ZNF776Q68DI1 518 aaPredicted RBP12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 RFWD3Q6PCD5 774 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 PIGZQ86VD9 579 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 AADATQ8N5Z0 425 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 LINC00301Q8NCQ3 95 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 KIAA0895Q8NCT3 520 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 ENGASEQ8NFI3 743 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 TAS1R2Q8TE23 839 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 WFIKKN2Q8TEU8 576 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 TTC9Q92623 222 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 FAM129BQ96TA1 746 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 KCTD10Q9H3F6 313 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 PLA2G4CQ9UP65 541 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 MTMR6Q9Y217 621 aa12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 NYNRINQ9P2P1 1898 aaKnown RBP12.4□□□□□ -0.42
SPTLC1P3-201ENST00000403408 SPTAN1Q13813 2472 aaKnown RBP12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 RP1P56715 2156 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 A0A1W2PNU3 283 aaPredicted RBP12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 MSI1O43347 362 aaKnown RBP12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 STX6O43752 255 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 RPN1P04843 607 aaKnown RBP12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 CD44P16070 742 aaKnown RBP12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 ABCB4P21439 1286 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 CD38P28907 300 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 SLC6A4P31645 630 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 CTSOP43234 321 aaPredicted RBP12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 RXRGP48443 463 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 ARID5AQ03989 594 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 PPP3CAQ08209 521 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 PDE4CQ08493 712 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 FAM133BQ5BKY9 247 aaKnown RBP12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 C9orf64Q5T6V5 341 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 ARHGAP40Q5TG30 622 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 PM20D1Q6GTS8 502 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 MMS22LQ6ZRQ5 1243 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 USP30Q70CQ3 517 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 TADA2BQ86TJ2 420 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 SLC9A9Q8IVB4 645 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 DHX40Q8IX18 779 aaKnown RBP12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 CACTIN-AS1Q8N1I8 211 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 SLC4A11Q8NBS3 891 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 TMEM174Q8WUU8 243 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 BAP1Q92560 729 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 EDEM1Q92611 657 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 TAF4BQ92750 862 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 PLD4Q96BZ4 506 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 CDK5RAP1Q96SZ6 601 aaKnown RBP12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 BACH2Q9BYV9 841 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 ULBP1Q9BZM6 244 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 AASDHPPTQ9NRN7 309 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 ARHGAP20Q9P2F6 1191 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 CGNQ9P2M7 1197 aaKnown RBP12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 NOTCH2Q04721 2471 aa12.39□□□□□ -0.43
SPTLC1P3-201ENST00000403408 TTC34A8MYJ7 566 aa12.38□□□□□ -0.43
SPTLC1P3-201ENST00000403408 TLR4O00206 839 aa12.38□□□□□ -0.43
SPTLC1P3-201ENST00000403408 CAPN9O14815 690 aa12.38□□□□□ -0.43
SPTLC1P3-201ENST00000403408 TRIM49P0CI25 452 aa12.38□□□□□ -0.43
SPTLC1P3-201ENST00000403408 TRIM49CP0CI26 452 aa12.38□□□□□ -0.43
SPTLC1P3-201ENST00000403408 GIMD1P0DJR0 217 aa12.38□□□□□ -0.43
SPTLC1P3-201ENST00000403408 MYF5P13349 255 aa12.38□□□□□ -0.43
SPTLC1P3-201ENST00000403408 P4HA1P13674 534 aa12.38□□□□□ -0.43
SPTLC1P3-201ENST00000403408 CKMT2P17540 419 aa12.38□□□□□ -0.43
SPTLC1P3-201ENST00000403408 PIK3CAP42336 1068 aa12.38□□□□□ -0.43
SPTLC1P3-201ENST00000403408 RAD23BP54727 409 aa12.38□□□□□ -0.43
SPTLC1P3-201ENST00000403408 CST6Q15828 149 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms