RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 SLC1A1P43005 524 aa16.48■□□□□ 0.23
HMGA1-204ENST00000401473 IRAK1P51617 712 aa16.48■□□□□ 0.23
HMGA1-204ENST00000401473 RPS24P62847 133 aaKnown RBP16.48■□□□□ 0.23
HMGA1-204ENST00000401473 BOLA3Q53S33 107 aa16.48■□□□□ 0.23
HMGA1-204ENST00000401473 C11orf63Q6NUN7 778 aa16.48■□□□□ 0.23
HMGA1-204ENST00000401473 CD101Q93033 1021 aa16.48■□□□□ 0.23
HMGA1-204ENST00000401473 TMA16Q96EY4 203 aaKnown RBP16.48■□□□□ 0.23
HMGA1-204ENST00000401473 AP4E1Q9UPM8 1137 aa16.48■□□□□ 0.23
HMGA1-204ENST00000401473 WDFY4Q6ZS81 3184 aa16.48■□□□□ 0.23
HMGA1-204ENST00000401473 SRGAP2O75044 1071 aa16.48■□□□□ 0.23
HMGA1-204ENST00000401473 AIF1P55008 147 aa16.48■□□□□ 0.23
HMGA1-204ENST00000401473 SEMA3BQ13214 749 aa16.48■□□□□ 0.23
HMGA1-204ENST00000401473 FYB2Q5VWT5 728 aa16.48■□□□□ 0.23
HMGA1-204ENST00000401473 CHSY1Q86X52 802 aa16.48■□□□□ 0.23
HMGA1-204ENST00000401473 LGI2Q8N0V4 545 aa16.48■□□□□ 0.23
HMGA1-204ENST00000401473 CCAR2Q8N163 923 aaKnown RBP16.48■□□□□ 0.23
HMGA1-204ENST00000401473 C17orf53Q8N3J3 647 aaPredicted RBP16.48■□□□□ 0.23
HMGA1-204ENST00000401473 CALR3Q96L12 384 aaKnown RBP16.48■□□□□ 0.23
HMGA1-204ENST00000401473 TRPV5Q9NQA5 729 aa16.48■□□□□ 0.23
HMGA1-204ENST00000401473 SLC2A4RGQ9NR83 387 aa16.48■□□□□ 0.23
HMGA1-204ENST00000401473 HEBP1Q9NRV9 189 aa16.48■□□□□ 0.23
HMGA1-204ENST00000401473 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.48■□□□□ 0.23
HMGA1-204ENST00000401473 CLEC4EQ9ULY5 219 aa16.48■□□□□ 0.23
HMGA1-204ENST00000401473 ZSCAN12O43309 604 aa16.47■□□□□ 0.23
HMGA1-204ENST00000401473 LRIG2O94898 1065 aa16.47■□□□□ 0.23
HMGA1-204ENST00000401473 TNNT1P13805 278 aa16.47■□□□□ 0.23
HMGA1-204ENST00000401473 L1CAMP32004 1257 aa16.47■□□□□ 0.23
HMGA1-204ENST00000401473 SOX9P48436 509 aa16.47■□□□□ 0.23
HMGA1-204ENST00000401473 MTA1Q13330 715 aa16.47■□□□□ 0.23
HMGA1-204ENST00000401473 HADHQ16836 314 aaKnown RBP16.47■□□□□ 0.23
HMGA1-204ENST00000401473 EFHC2Q5JST6 749 aa16.47■□□□□ 0.23
HMGA1-204ENST00000401473 MANEALQ5VSG8 457 aa16.47■□□□□ 0.23
HMGA1-204ENST00000401473 NAIF1Q69YI7 327 aaPredicted RBP16.47■□□□□ 0.23
HMGA1-204ENST00000401473 NT5DC3Q86UY8 548 aa16.47■□□□□ 0.23
HMGA1-204ENST00000401473 HSPH1Q92598 858 aa16.47■□□□□ 0.23
HMGA1-204ENST00000401473 BBS2Q9BXC9 721 aa16.47■□□□□ 0.23
HMGA1-204ENST00000401473 DHX35Q9H5Z1 703 aaKnown RBP16.47■□□□□ 0.23
HMGA1-204ENST00000401473 NEU3Q9UQ49 428 aa16.47■□□□□ 0.23
HMGA1-204ENST00000401473 TECTAO75443 2155 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 IGLV3-10A0A075B6K4 115 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 SHISA7A6NL88 538 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 E9PAM4 449 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 NEDD8-MDP1E9PL57 170 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 SPOPO43791 374 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 NFATC1O95644 943 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 CD48P09326 243 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 IL4RP24394 825 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 GJA4P35212 333 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 IFI16Q16666 785 aaKnown RBP16.46■□□□□ 0.23
HMGA1-204ENST00000401473 ANO4Q32M45 955 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 ITPRIPL2Q3MIP1 535 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 C5orf22Q49AR2 442 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 CIR1Q86X95 450 aaPredicted RBP16.46■□□□□ 0.23
HMGA1-204ENST00000401473 NAT16Q8N8M0 369 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 DDI1Q8WTU0 396 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 KRT35Q92764 455 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 KCTD15Q96SI1 283 aaPredicted RBP16.46■□□□□ 0.23
HMGA1-204ENST00000401473 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.46■□□□□ 0.23
HMGA1-204ENST00000401473 MPP6Q9NZW5 540 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 MARK1Q9P0L2 795 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 PACSIN2Q9UNF0 486 aaPredicted RBP16.46■□□□□ 0.23
HMGA1-204ENST00000401473 MIA3Q5JRA6 1907 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 COL4A3Q01955 1670 aa16.46■□□□□ 0.23
HMGA1-204ENST00000401473 DRGXA6NNA5 263 aa16.46■□□□□ 0.22
HMGA1-204ENST00000401473 F5H5T6 163 aa16.46■□□□□ 0.22
HMGA1-204ENST00000401473 TRIM24O15164 1050 aa16.46■□□□□ 0.22
HMGA1-204ENST00000401473 CNTN5O94779 1100 aa16.46■□□□□ 0.22
HMGA1-204ENST00000401473 FTCDO95954 541 aa16.46■□□□□ 0.22
HMGA1-204ENST00000401473 PENKP01210 267 aaPredicted RBP16.46■□□□□ 0.22
HMGA1-204ENST00000401473 TYRP14679 529 aa16.46■□□□□ 0.22
HMGA1-204ENST00000401473 HOXD9P28356 352 aaPredicted RBP16.46■□□□□ 0.22
HMGA1-204ENST00000401473 GJC1P36383 396 aa16.46■□□□□ 0.22
HMGA1-204ENST00000401473 MARCKSL1P49006 195 aa16.46■□□□□ 0.22
HMGA1-204ENST00000401473 ARSEP51690 589 aa16.46■□□□□ 0.22
HMGA1-204ENST00000401473 NRG1Q02297 640 aaPredicted RBP16.46■□□□□ 0.22
HMGA1-204ENST00000401473 MESP2Q0VG99 397 aa16.46■□□□□ 0.22
HMGA1-204ENST00000401473 DPYSL2Q16555 572 aa16.46■□□□□ 0.22
HMGA1-204ENST00000401473 MPPE1Q53F39 396 aa16.46■□□□□ 0.22
HMGA1-204ENST00000401473 ALFQ53S48 1182 aa16.46■□□□□ 0.22
HMGA1-204ENST00000401473 C12orf40Q86WS4 652 aa16.46■□□□□ 0.22
HMGA1-204ENST00000401473 PSTKQ8IV42 348 aaKnown RBP16.46■□□□□ 0.22
HMGA1-204ENST00000401473 TEKT4Q8WW24 435 aa16.46■□□□□ 0.22
HMGA1-204ENST00000401473 RAPGEF5Q92565 580 aa16.46■□□□□ 0.22
HMGA1-204ENST00000401473 RPRD1AQ96P16 312 aaPredicted RBP16.46■□□□□ 0.22
HMGA1-204ENST00000401473 DDX50Q9BQ39 737 aaKnown RBP16.46■□□□□ 0.22
HMGA1-204ENST00000401473 KLHL11Q9NVR0 708 aa16.46■□□□□ 0.22
HMGA1-204ENST00000401473 COL4A2P08572 1712 aa16.46■□□□□ 0.22
HMGA1-204ENST00000401473 DCXO43602 365 aa16.45■□□□□ 0.22
HMGA1-204ENST00000401473 CREB3O43889 395 aa16.45■□□□□ 0.22
HMGA1-204ENST00000401473 TBL1XO60907 577 aa16.45■□□□□ 0.22
HMGA1-204ENST00000401473 ADH5P11766 374 aa16.45■□□□□ 0.22
HMGA1-204ENST00000401473 ZXDAP98168 799 aa16.45■□□□□ 0.22
HMGA1-204ENST00000401473 HS1BP3Q53T59 392 aa16.45■□□□□ 0.22
HMGA1-204ENST00000401473 PPP6R3Q5H9R7 873 aaPredicted RBP16.45■□□□□ 0.22
HMGA1-204ENST00000401473 LRRC38Q5VT99 294 aa16.45■□□□□ 0.22
HMGA1-204ENST00000401473 TXNDC11Q6PKC3 985 aa16.45■□□□□ 0.22
HMGA1-204ENST00000401473 POLNQ7Z5Q5 900 aa16.45■□□□□ 0.22
HMGA1-204ENST00000401473 RHOT1Q8IXI2 618 aa16.45■□□□□ 0.22
HMGA1-204ENST00000401473 UBALD2Q8IYN6 164 aa16.45■□□□□ 0.22
HMGA1-204ENST00000401473 CSGALNACT1Q8TDX6 532 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms