RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 PPP1R10Q96QC0 940 aaKnown RBP11.61□□□□□ -0.55
TTC28-201ENST00000397906 SLC15A5A6NIM6 579 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 CCL16O15467 120 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 PTPN1P18031 435 aaKnown RBP11.6□□□□□ -0.55
TTC28-201ENST00000397906 ZNF470Q6ECI4 717 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 FRMD8P1Q9BZ68 369 aaPredicted RBP11.6□□□□□ -0.55
TTC28-201ENST00000397906 BTN3A1O00481 513 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 PLSCR1O15162 318 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 RARGP13631 454 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 DLG4P78352 724 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 SLC6A3Q01959 620 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 MRPL28Q13084 256 aaKnown RBP11.6□□□□□ -0.55
TTC28-201ENST00000397906 USP41Q3LFD5 358 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 EXD1Q8NHP7 514 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 HTR3CQ8WXA8 447 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 SEC16BQ96JE7 1060 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 FAM50BQ9Y247 325 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 CLDN5O00501 218 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 RPN2P04844 631 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 GRK4P32298 578 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 PFKPQ01813 784 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 CDH17Q12864 832 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 GSTA3Q16772 222 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 TTI2Q6NXR4 508 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 NLGN2Q8NFZ4 835 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 TRPC4APQ8TEL6 797 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 BBS4Q96RK4 519 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 ST3GAL5Q9UNP4 418 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 FYNP06241 537 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 ZNF7P17097 686 aaPredicted RBP11.6□□□□□ -0.55
TTC28-201ENST00000397906 TNFSF9P41273 254 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 CCNI2Q6ZMN8 369 aaPredicted RBP11.6□□□□□ -0.55
TTC28-201ENST00000397906 NECAB2Q7Z6G3 386 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.6□□□□□ -0.55
TTC28-201ENST00000397906 USP6NLQ92738 828 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 FOXP3Q9BZS1 431 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 DCLK3Q9C098 648 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 ASB7Q9H672 318 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.6□□□□□ -0.55
TTC28-201ENST00000397906 CAPN6Q9Y6Q1 641 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 ADH1AP07327 375 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 SHROOM1Q2M3G4 852 aaPredicted RBP11.6□□□□□ -0.55
TTC28-201ENST00000397906 DNAJC16Q9Y2G8 782 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 HSD17B3P37058 310 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 DDR2Q16832 855 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 TPD52L3Q96J77 140 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 C10orf88Q9H8K7 445 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 ACOT9Q9Y305 439 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 LRRC23Q53EV4 343 aaPredicted RBP11.6□□□□□ -0.55
TTC28-201ENST00000397906 HECTD3Q5T447 861 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 USP7Q93009 1102 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 TMEM245Q9H330 911 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 ZNF112Q9UJU3 913 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 TMCC3Q9ULS5 477 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 CFAP73A6NFT4 308 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 SEC22BO75396 215 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 CYP4Z1Q86W10 505 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 FRMD8Q9BZ67 464 aaPredicted RBP11.6□□□□□ -0.55
TTC28-201ENST00000397906 PARVBQ9HBI1 364 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 CLK1P49759 484 aaKnown RBP11.6□□□□□ -0.55
TTC28-201ENST00000397906 PRKAG3Q9UGI9 489 aa11.6□□□□□ -0.55
TTC28-201ENST00000397906 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.6□□□□□ -0.55
TTC28-201ENST00000397906 ARHGEF9O43307 516 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 SEL1L3Q68CR1 1132 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 ACTL9Q8TC94 416 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 BBS2Q9BXC9 721 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 DDX28Q9NUL7 540 aaKnown RBP11.59□□□□□ -0.55
TTC28-201ENST00000397906 SCN3BQ9NY72 215 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 IFNA16P05015 189 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 CD86P42081 329 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 GSSP48637 474 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 FBXW10Q5XX13 1052 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 GATAD2AQ86YP4 633 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 C16orf96A6NNT2 1141 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 NEDD8-MDP1E9PL57 170 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 HMGCRP04035 888 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 HNRNPRO43390 633 aaKnown RBP11.59□□□□□ -0.55
TTC28-201ENST00000397906 RUNX1T1Q06455 604 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 AGBL2Q5U5Z8 902 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 CATSPER2Q96P56 530 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 OR12D3Q9UGF7 316 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 PHTF1Q9UMS5 762 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 RAD51BO15315 384 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 CRY1Q16526 586 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 LRRC8DQ7L1W4 858 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 ROPN1BQ9BZX4 212 aaPredicted RBP11.59□□□□□ -0.55
TTC28-201ENST00000397906 CARD9Q9H257 536 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 ROPN1Q9HAT0 212 aaPredicted RBP11.59□□□□□ -0.55
TTC28-201ENST00000397906 BGNP21810 368 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 AQP5P55064 265 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 PSMD5Q16401 504 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 CHPFQ8IZ52 775 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 MCOLN3Q8TDD5 553 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 MYLPFQ96A32 169 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 CENPTQ96BT3 561 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 CCT7Q99832 543 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 PORCNQ9H237 461 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 USP39Q53GS9 565 aaKnown RBP11.59□□□□□ -0.55
TTC28-201ENST00000397906 ZDHHC17Q8IUH5 632 aa11.59□□□□□ -0.55
TTC28-201ENST00000397906 TMEM86AQ8N2M4 240 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms