RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 FUKQ8N0W3 1084 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 LEMD2Q8NC56 503 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 KCTD13Q8WZ19 329 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 B3GALT6Q96L58 329 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 SLC4A5Q9BY07 1137 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 TRIM54Q9BYV2 358 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 KATNBL1Q9H079 304 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 VIPAS39Q9H9C1 493 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 NDFIP2Q9NV92 336 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 OGDHLQ9ULD0 1010 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 DRG1Q9Y295 367 aaKnown RBP8.5□□□□□ -1.05
PTPRD-204ENST00000397606 SCN4AP35499 1836 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 A0A0U1RQJ8 604 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 CCDC78A2IDD5 438 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 SH3BP5O60239 455 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 LRCH4O75427 683 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 PAGE1O75459 146 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 CRTAMO95727 393 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 TTC4O95801 387 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 GOT1P17174 413 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 AKT1P31749 480 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 GGCXP38435 758 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 CLDN10P78369 228 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 GABPB1Q06547 395 aaPredicted RBP8.5□□□□□ -1.05
PTPRD-204ENST00000397606 ZNF697Q5TEC3 545 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 LRIG3Q6UXM1 1119 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 C16orf59Q7L2K0 433 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 ZNF461Q8TAF7 563 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 LMO3Q8TAP4 145 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 TGS1Q96RS0 853 aaKnown RBP8.5□□□□□ -1.05
PTPRD-204ENST00000397606 APOL5Q9BWW9 433 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 TLR9Q9NR96 1032 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 RPS6KL1Q9Y6S9 549 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 ADAMTSL1Q8N6G6 1762 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 hCG_1818297A0A087WSY0 165 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 C2CD4BA6NLJ0 364 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 SNX2O60749 519 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 MMP13P45452 471 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 PLEKHG4Q58EX7 1191 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 UBXN11Q5T124 520 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 TMCO4Q5TGY1 634 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 DSG4Q86SJ6 1040 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 CASKIN2Q8WXE0 1202 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 MCRS1Q96EZ8 462 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 ROPN1BQ9BZX4 212 aaPredicted RBP8.5□□□□□ -1.05
PTPRD-204ENST00000397606 POLR1EQ9GZS1 481 aaKnown RBP8.5□□□□□ -1.05
PTPRD-204ENST00000397606 MCOLN1Q9GZU1 580 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 ROPN1Q9HAT0 212 aaPredicted RBP8.5□□□□□ -1.05
PTPRD-204ENST00000397606 PCDH18Q9HCL0 1135 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 DNAJB4Q9UDY4 337 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 YIPF1Q9Y548 306 aa8.5□□□□□ -1.05
PTPRD-204ENST00000397606 TBL1XO60907 577 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 GPC4O75487 556 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 BRAFP15056 766 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 RBL1P28749 1068 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 GATMP50440 423 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 SOX4Q06945 474 aaPredicted RBP8.49□□□□□ -1.05
PTPRD-204ENST00000397606 FASTKD1Q53R41 847 aaKnown RBP8.49□□□□□ -1.05
PTPRD-204ENST00000397606 OSTM1Q86WC4 334 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 CACNA2D3Q8IZS8 1091 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 TDRD5Q8NAT2 981 aaKnown RBP8.49□□□□□ -1.05
PTPRD-204ENST00000397606 C8orf48Q96LL4 319 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 RABEP2Q9H5N1 569 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 PNPLA8Q9NP80 782 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 PRDM10Q9NQV6 1147 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 PSMC3IPQ9P2W1 217 aaPredicted RBP8.49□□□□□ -1.05
PTPRD-204ENST00000397606 ERI2A8K979 691 aaKnown RBP8.49□□□□□ -1.05
PTPRD-204ENST00000397606 FSCN2O14926 492 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 MDM4O15151 490 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 EIF3HO15372 352 aaKnown RBP eCLIP8.49□□□□□ -1.05
PTPRD-204ENST00000397606 MSI1O43347 362 aaKnown RBP8.49□□□□□ -1.05
PTPRD-204ENST00000397606 DNAJC6O75061 913 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 CLDN11O75508 207 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 ASMTLO95671 621 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 MARCKSL1P49006 195 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 MAGOHP61326 146 aaKnown RBP8.49□□□□□ -1.05
PTPRD-204ENST00000397606 CDH17Q12864 832 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 ASTE1Q2TB18 679 aaPredicted RBP8.49□□□□□ -1.05
PTPRD-204ENST00000397606 AARS2Q5JTZ9 985 aaKnown RBP8.49□□□□□ -1.05
PTPRD-204ENST00000397606 NXNQ6DKJ4 435 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 MRNIPQ6NTE8 343 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 FBXO25Q8TCJ0 367 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 FICDQ9BVA6 458 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 HAPLN2Q9GZV7 340 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 CFAP97Q9P2B7 532 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 KIAA0100Q14667 2235 aaKnown RBP8.49□□□□□ -1.05
PTPRD-204ENST00000397606 MAGEB16A2A368 324 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 TBC1D3BA6NDS4 549 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 YJEFN3A6XGL0 299 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 E7ENQ6 273 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 PTGESO14684 152 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 GMNNO75496 209 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 ADH1CP00326 375 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 MAGEA11P43364 429 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 MAPK8P45983 427 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 HDAC4P56524 1084 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 MTM1Q13496 603 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 SMAD1Q15797 465 aaKnown RBP8.49□□□□□ -1.05
PTPRD-204ENST00000397606 CCDC38Q502W7 563 aa8.49□□□□□ -1.05
PTPRD-204ENST00000397606 C1orf220Q5T0J3 134 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 495.2 ms