RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ALDH6A1Q02252 535 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 SLC20A2Q08357 652 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 MAD2L1Q13257 205 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 ACAP1Q15027 740 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 SMIM5Q71RC9 77 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 EID3Q8N140 333 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 PRCCQ92733 491 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 C9orf16Q9BUW7 83 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 ELOVL6Q9H5J4 265 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 MYOZ2Q9NPC6 264 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 RGS18Q9NS28 235 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 CENPXA8MT69 81 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 ATP4AP20648 1035 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 KLRK1P26718 216 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 EIF2S3P41091 472 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 PRKCIP41743 596 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 FOXR1Q6PIV2 292 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 CRELD2Q6UXH1 353 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 CLVS1Q8IUQ0 354 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 ARHGEF19Q8IW93 802 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 ZDHHC15Q96MV8 337 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 TRHDEQ9UKU6 1024 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 BARX2Q9UMQ3 279 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 TMX2Q9Y320 296 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 CAMSAP1Q5T5Y3 1602 aa10.48□□□□□ -0.73
LIMCH1-203ENST00000396595 INPP4BO15327 924 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 PHGDHO43175 533 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 TBC1D12O60347 775 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 PSMG1O95456 288 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 ADRA1DP25100 572 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 TKTP29401 623 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 TALDO1P37837 337 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 RAP1GAPP47736 663 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 LHX1P48742 406 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 PGS1Q32NB8 556 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 TTMPQ5BVD1 217 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 TMEM26Q6ZUK4 368 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 SH3RF1Q7Z6J0 888 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 ZNF467Q7Z7K2 595 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 KCNMB4Q86W47 210 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 RNASE11Q8TAA1 199 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 FBXO32Q969P5 355 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 SLC25A23Q9BV35 468 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 RTFDC1Q9BY42 306 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 DPY30Q9C005 99 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 ITGA11Q9UKX5 1188 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 EPB42P16452 691 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 FAAP100Q0VG06 881 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 SNX32Q86XE0 403 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 KATNAL2Q8IYT4 538 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 POU5F2Q8N7G0 328 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 HTR3CQ8WXA8 447 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 COLEC11Q9BWP8 271 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 HDHD2Q9H0R4 259 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 ACTR8Q9H981 624 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 SCUBE2Q9NQ36 999 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 RBM22Q9NW64 420 aaKnown RBP eCLIP10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 FAM237AA0A1B0GTK4 181 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 TK2O00142 265 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 RARRES1P49788 294 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 RRP1BQ14684 758 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 DHRSXQ8N5I4 330 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 FAM45AQ8TCE6 357 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 MRPL48Q96GC5 212 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 MNTQ99583 582 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 ADGRE3Q9BY15 652 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 ROGDIQ9GZN7 287 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 RPRD1BQ9NQG5 326 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 ENOPH1Q9UHY7 261 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 STOML2Q9UJZ1 356 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 DNPEPQ9ULA0 475 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 C2CD2Q9Y426 696 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 FRMPD4Q14CM0 1322 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 ERI2A8K979 691 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 MEI4A8MW99 385 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 HACD1B0YJ81 288 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 PEX1O43933 1283 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 FAM20BO75063 409 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 CBFA2T3O75081 653 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 CPSF4O95639 269 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 MSL3P1P0C860 447 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 PDZK1Q5T2W1 519 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 ILDR2Q71H61 639 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 KRT77Q7Z794 578 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 ILDR1Q86SU0 546 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 TXNRD3Q86VQ6 643 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 MIB1Q86YT6 1006 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 MIER2Q8N344 545 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 RORBQ92753 470 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 KAT2BQ92831 832 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 SEPHS2Q99611 448 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 PDCD2LQ9BRP1 358 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 EMILIN2Q9BXX0 1053 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 ARMCX1Q9P291 453 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 SIK3Q9Y2K2 1263 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 TPRKBQ9Y3C4 175 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 C17orf102A2RUQ5 167 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 VPS4BO75351 444 aa10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 HOXB8P17481 243 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-203ENST00000396595 CYP2B6P20813 491 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms