RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ANTXRLA6NF34 631 aa22.47■■□□□ 1.19
CLN3-207ENST00000395653 K7ESF4 209 aa22.47■■□□□ 1.19
CLN3-207ENST00000395653 MFAP3LO75121 409 aa22.47■■□□□ 1.19
CLN3-207ENST00000395653 TIE1P35590 1138 aa22.47■■□□□ 1.19
CLN3-207ENST00000395653 ATXN1P54253 815 aaKnown RBP22.47■■□□□ 1.19
CLN3-207ENST00000395653 RPS24P62847 133 aaKnown RBP22.47■■□□□ 1.19
CLN3-207ENST00000395653 NHLH1Q02575 133 aa22.47■■□□□ 1.19
CLN3-207ENST00000395653 EIF4HQ15056 248 aaKnown RBP22.47■■□□□ 1.19
CLN3-207ENST00000395653 ACBD5Q5T8D3 534 aaPredicted RBP22.47■■□□□ 1.19
CLN3-207ENST00000395653 EMC10Q5UCC4 262 aa22.47■■□□□ 1.19
CLN3-207ENST00000395653 PLEKHA7Q6IQ23 1121 aa22.47■■□□□ 1.19
CLN3-207ENST00000395653 TRMT11Q7Z4G4 463 aaKnown RBP22.47■■□□□ 1.19
CLN3-207ENST00000395653 DDX51Q8N8A6 666 aaKnown RBP eCLIP22.47■■□□□ 1.19
CLN3-207ENST00000395653 ZNF513Q8N8E2 541 aaPredicted RBP22.47■■□□□ 1.19
CLN3-207ENST00000395653 CENPIQ92674 756 aaPredicted RBP22.47■■□□□ 1.19
CLN3-207ENST00000395653 NELL1Q92832 810 aa22.47■■□□□ 1.19
CLN3-207ENST00000395653 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP22.47■■□□□ 1.19
CLN3-207ENST00000395653 ABHD10Q9NUJ1 306 aa22.47■■□□□ 1.19
CLN3-207ENST00000395653 MMP17Q9ULZ9 603 aa22.47■■□□□ 1.19
CLN3-207ENST00000395653 HS3ST4Q9Y661 456 aa22.47■■□□□ 1.19
CLN3-207ENST00000395653 MYBL1P10243 752 aa22.46■■□□□ 1.19
CLN3-207ENST00000395653 HLA-FP30511 346 aa22.46■■□□□ 1.19
CLN3-207ENST00000395653 HOXA6P31267 233 aa22.46■■□□□ 1.19
CLN3-207ENST00000395653 ZNF143P52747 638 aaPredicted RBP22.46■■□□□ 1.19
CLN3-207ENST00000395653 RPL7AP62424 266 aaKnown RBP22.46■■□□□ 1.19
CLN3-207ENST00000395653 TBX2Q13207 712 aaPredicted RBP22.46■■□□□ 1.19
CLN3-207ENST00000395653 CDO1Q16878 200 aa22.46■■□□□ 1.19
CLN3-207ENST00000395653 GEN1Q17RS7 908 aa22.46■■□□□ 1.19
CLN3-207ENST00000395653 C15orf59Q2T9L4 293 aaPredicted RBP22.46■■□□□ 1.19
CLN3-207ENST00000395653 RABGAP1LQ5R372 815 aa22.46■■□□□ 1.19
CLN3-207ENST00000395653 TTC39BQ5VTQ0 682 aaPredicted RBP22.46■■□□□ 1.19
CLN3-207ENST00000395653 DCUN1D2Q6PH85 259 aa22.46■■□□□ 1.19
CLN3-207ENST00000395653 FAM131BQ86XD5 332 aa22.46■■□□□ 1.19
CLN3-207ENST00000395653 MFN1Q8IWA4 741 aa22.46■■□□□ 1.19
CLN3-207ENST00000395653 ALLCQ8N6M5 410 aa22.46■■□□□ 1.19
CLN3-207ENST00000395653 ANLNQ9NQW6 1124 aa22.46■■□□□ 1.19
CLN3-207ENST00000395653 ZNHIT6Q9NWK9 470 aaKnown RBP22.46■■□□□ 1.19
CLN3-207ENST00000395653 STIM2Q9P246 746 aa22.46■■□□□ 1.19
CLN3-207ENST00000395653 HCN2Q9UL51 889 aa22.46■■□□□ 1.19
CLN3-207ENST00000395653 SLC8A2Q9UPR5 921 aa22.46■■□□□ 1.19
CLN3-207ENST00000395653 A0A087X0T9 212 aa22.45■■□□□ 1.18
CLN3-207ENST00000395653 I6L893 689 aaPredicted RBP22.45■■□□□ 1.18
CLN3-207ENST00000395653 FAM228BP0C875 321 aa22.45■■□□□ 1.18
CLN3-207ENST00000395653 NRLP54845 237 aa22.45■■□□□ 1.18
CLN3-207ENST00000395653 MAMLD1Q13495 774 aa22.45■■□□□ 1.18
CLN3-207ENST00000395653 AUHQ13825 339 aaKnown RBP22.45■■□□□ 1.18
CLN3-207ENST00000395653 DMC1Q14565 340 aa22.45■■□□□ 1.18
CLN3-207ENST00000395653 TSR1Q2NL82 804 aaKnown RBP22.45■■□□□ 1.18
CLN3-207ENST00000395653 FBXL22Q6P050 247 aa22.45■■□□□ 1.18
CLN3-207ENST00000395653 TMC6Q7Z403 805 aa22.45■■□□□ 1.18
CLN3-207ENST00000395653 CNGA4Q8IV77 575 aa22.45■■□□□ 1.18
CLN3-207ENST00000395653 CFAP52Q8N1V2 620 aa22.45■■□□□ 1.18
CLN3-207ENST00000395653 CAMKK1Q8N5S9 505 aa22.45■■□□□ 1.18
CLN3-207ENST00000395653 FIBINQ8TAL6 211 aa22.45■■□□□ 1.18
CLN3-207ENST00000395653 WFIKKN2Q8TEU8 576 aa22.45■■□□□ 1.18
CLN3-207ENST00000395653 ZNF653Q96CK0 615 aa22.45■■□□□ 1.18
CLN3-207ENST00000395653 MRFAP1L1Q96HT8 127 aa22.45■■□□□ 1.18
CLN3-207ENST00000395653 HAPLN3Q96S86 360 aa22.45■■□□□ 1.18
CLN3-207ENST00000395653 CNOT8Q9UFF9 292 aaKnown RBP22.45■■□□□ 1.18
CLN3-207ENST00000395653 ATMINO43313 823 aaPredicted RBP22.44■■□□□ 1.18
CLN3-207ENST00000395653 LUC7L3O95232 432 aaKnown RBP22.44■■□□□ 1.18
CLN3-207ENST00000395653 KLF8O95600 359 aaPredicted RBP22.44■■□□□ 1.18
CLN3-207ENST00000395653 ZNF75DP51815 510 aa22.44■■□□□ 1.18
CLN3-207ENST00000395653 E2F5Q15329 346 aa22.44■■□□□ 1.18
CLN3-207ENST00000395653 EOGTQ5NDL2 527 aa22.44■■□□□ 1.18
CLN3-207ENST00000395653 SH3PXD2AQ5TCZ1 1133 aa22.44■■□□□ 1.18
CLN3-207ENST00000395653 ZC3H14Q6PJT7 736 aaKnown RBP22.44■■□□□ 1.18
CLN3-207ENST00000395653 KIAA0907Q7Z7F0 614 aaPredicted RBP22.44■■□□□ 1.18
CLN3-207ENST00000395653 DNAAF5Q86Y56 855 aa22.44■■□□□ 1.18
CLN3-207ENST00000395653 CCDC117Q8IWD4 279 aaPredicted RBP22.44■■□□□ 1.18
CLN3-207ENST00000395653 AHI1Q8N157 1196 aa22.44■■□□□ 1.18
CLN3-207ENST00000395653 CCDC33Q8N5R6 958 aa22.44■■□□□ 1.18
CLN3-207ENST00000395653 TXNDC5Q8NBS9 432 aaKnown RBP22.44■■□□□ 1.18
CLN3-207ENST00000395653 WFDC5Q8TCV5 224 aa22.44■■□□□ 1.18
CLN3-207ENST00000395653 FAM172AQ8WUF8 416 aa22.44■■□□□ 1.18
CLN3-207ENST00000395653 UCMAQ8WVF2 138 aa22.44■■□□□ 1.18
CLN3-207ENST00000395653 C1orf74Q96LT6 269 aa22.44■■□□□ 1.18
CLN3-207ENST00000395653 ABCB8Q9NUT2 735 aa22.44■■□□□ 1.18
CLN3-207ENST00000395653 ZSCAN32Q9NX65 697 aa22.44■■□□□ 1.18
CLN3-207ENST00000395653 PCDHGA2Q9Y5H1 932 aa22.44■■□□□ 1.18
CLN3-207ENST00000395653 SCINQ9Y6U3 715 aa22.44■■□□□ 1.18
CLN3-207ENST00000395653 ATG2BQ96BY7 2078 aa22.44■■□□□ 1.18
CLN3-207ENST00000395653 A0A1B0GVM2 712 aa22.43■■□□□ 1.18
CLN3-207ENST00000395653 TCAF2A6NFQ2 919 aa22.43■■□□□ 1.18
CLN3-207ENST00000395653 SGK1O00141 431 aa22.43■■□□□ 1.18
CLN3-207ENST00000395653 TIMM44O43615 452 aa22.43■■□□□ 1.18
CLN3-207ENST00000395653 PABPC1P11940 636 aaKnown RBP22.43■■□□□ 1.18
CLN3-207ENST00000395653 HNRNPLP14866 589 aaKnown RBP eCLIP22.43■■□□□ 1.18
CLN3-207ENST00000395653 EIF4A3P38919 411 aaKnown RBP22.43■■□□□ 1.18
CLN3-207ENST00000395653 NBL1P41271 181 aa22.43■■□□□ 1.18
CLN3-207ENST00000395653 ADKP55263 362 aaKnown RBP22.43■■□□□ 1.18
CLN3-207ENST00000395653 HDAC4P56524 1084 aa22.43■■□□□ 1.18
CLN3-207ENST00000395653 CDH18Q13634 790 aa22.43■■□□□ 1.18
CLN3-207ENST00000395653 CRY1Q16526 586 aa22.43■■□□□ 1.18
CLN3-207ENST00000395653 ARL13BQ3SXY8 428 aa22.43■■□□□ 1.18
CLN3-207ENST00000395653 C5orf22Q49AR2 442 aa22.43■■□□□ 1.18
CLN3-207ENST00000395653 EGFLAMQ63HQ2 1017 aa22.43■■□□□ 1.18
CLN3-207ENST00000395653 ALKBH5Q6P6C2 394 aaKnown RBP22.43■■□□□ 1.18
CLN3-207ENST00000395653 CARNMT1Q8N4J0 409 aa22.43■■□□□ 1.18
CLN3-207ENST00000395653 ZBTB44Q8NCP5 570 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms