RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SEMG2Q02383 582 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 SPARCL1Q14515 664 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 ZNF268Q14587 947 aaPredicted RBP10.61□□□□□ -0.71
COL6A3-205ENST00000392004 RABGAP1LQ5R372 815 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 CLEC20AQ6ZU45 233 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 Q7L0L9 218 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 RD3Q7Z3Z2 195 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 LRRTM3Q86VH5 581 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 PDIK1LQ8N165 341 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 RAPGEF5Q92565 580 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 ZNF576Q9H609 170 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 AFF4Q9UHB7 1163 aaKnown RBP10.61□□□□□ -0.71
COL6A3-205ENST00000392004 SALL4Q9UJQ4 1053 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 WNT6Q9Y6F9 365 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 PCDH8O95206 1070 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 GOT1P17174 413 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 PTPN2P17706 415 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 NOS2P35228 1153 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 OXCT1P55809 520 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 RHOAP61586 193 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 UBXN2BQ14CS0 331 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 LCLAT1Q6UWP7 414 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 C6orf89Q6UWU4 347 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 CCDC110Q8TBZ0 833 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 PIK3R5Q8WYR1 880 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 SYN2Q92777 582 aaPredicted RBP10.61□□□□□ -0.71
COL6A3-205ENST00000392004 HSFY1Q96LI6 401 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 KLC2Q9H0B6 622 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 TMLHEQ9NVH6 421 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 CDH22Q9UJ99 828 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 TBX21Q9UL17 535 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 QSER1Q2KHR3 1735 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 MTMR11A4FU01 709 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 SLC38A8A6NNN8 435 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 PPP1R12AO14974 1030 aaPredicted RBP10.61□□□□□ -0.71
COL6A3-205ENST00000392004 PYGMP11217 842 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 RFC2P35250 354 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 THOC5Q13769 683 aaKnown RBP10.61□□□□□ -0.71
COL6A3-205ENST00000392004 TEAD2Q15562 447 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 SERPINA13PQ6UXR4 307 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 KLHL5Q96PQ7 755 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 SLC24A3Q9HC58 644 aa10.61□□□□□ -0.71
COL6A3-205ENST00000392004 RBM22Q9NW64 420 aaKnown RBP eCLIP10.61□□□□□ -0.71
COL6A3-205ENST00000392004 INPPL1O15357 1258 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 TPH1P17752 444 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 CYP3A5P20815 502 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 VIPR2P41587 438 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 RPS24P62847 133 aaKnown RBP10.6□□□□□ -0.71
COL6A3-205ENST00000392004 FNDC3BQ53EP0 1204 aaKnown RBP10.6□□□□□ -0.71
COL6A3-205ENST00000392004 VSTM1Q6UX27 236 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 KIAA1324Q6UXG2 1013 aaKnown RBP10.6□□□□□ -0.71
COL6A3-205ENST00000392004 MAGEC3Q8TD91 643 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 DQX1Q8TE96 717 aaKnown RBP10.6□□□□□ -0.71
COL6A3-205ENST00000392004 CHMP6Q96FZ7 201 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 C9orf72Q96LT7 481 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 PPP1R10Q96QC0 940 aaKnown RBP10.6□□□□□ -0.71
COL6A3-205ENST00000392004 SNRNP25Q9BV90 132 aaKnown RBP10.6□□□□□ -0.71
COL6A3-205ENST00000392004 CINPQ9BW66 212 aaPredicted RBP10.6□□□□□ -0.71
COL6A3-205ENST00000392004 PTPRHQ9HD43 1115 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 DDX56Q9NY93 547 aaKnown RBP10.6□□□□□ -0.71
COL6A3-205ENST00000392004 LTBP1Q14766 1721 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 XPO1O14980 1071 aaKnown RBP10.6□□□□□ -0.71
COL6A3-205ENST00000392004 VIMP08670 466 aaKnown RBP10.6□□□□□ -0.71
COL6A3-205ENST00000392004 SLC1A1P43005 524 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 PRAMEP78395 509 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 ZNF844Q08AG5 666 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 BYSLQ13895 437 aaKnown RBP10.6□□□□□ -0.71
COL6A3-205ENST00000392004 TRADDQ15628 312 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 ERMARDQ5T6L9 678 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 MEI1Q5TIA1 1274 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 UNC45BQ8IWX7 931 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 RCOR2Q8IZ40 523 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 PYROXD1Q8WU10 500 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 PIWIL1Q96J94 861 aaKnown RBP10.6□□□□□ -0.71
COL6A3-205ENST00000392004 SCYL1Q96KG9 808 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 XYLT2Q9H1B5 865 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 SHOC2Q9UQ13 582 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 MYH10P35580 1976 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 POLD3Q15054 466 aaPredicted RBP10.6□□□□□ -0.71
COL6A3-205ENST00000392004 COLGALT2Q8IYK4 626 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 EIF1ADQ8N9N8 165 aaKnown RBP10.6□□□□□ -0.71
COL6A3-205ENST00000392004 KDM4CQ9H3R0 1056 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 SIX2Q9NPC8 291 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 FAM114A2Q9NRY5 505 aa10.6□□□□□ -0.71
COL6A3-205ENST00000392004 CCDC188H7C350 402 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 GDI1P31150 447 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 GCKP35557 465 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 SLMAPQ14BN4 828 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 C1orf220Q5T0J3 134 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 SH3RF2Q8TEC5 729 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 KXD1Q9BQD3 176 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 EBF3Q9H4W6 596 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 NOD2Q9HC29 1040 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 LRRC37AA6NMS7 1700 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 WDR27A2RRH5 827 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 CCT8L1PA6NM43 557 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 PIRO00625 290 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 TGM5O43548 720 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 PAGE1O75459 146 aa10.59□□□□□ -0.71
COL6A3-205ENST00000392004 CD72P21854 359 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms