RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 OSBPL8Q9BZF1 889 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 NACA2Q9H009 215 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 TRPV5Q9NQA5 729 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 FEZ2Q9UHY8 353 aaPredicted RBP10.56□□□□□ -0.72
VPS53-202ENST00000389040 CDH22Q9UJ99 828 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 SPTBN5Q9NRC6 3674 aaKnown RBP10.56□□□□□ -0.72
VPS53-202ENST00000389040 A0A1W2PQH9 124 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 YJEFN3A6XGL0 299 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 E7ENQ6 273 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 COCHO43405 550 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 GABBR2O75899 941 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 CKMP06732 381 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 PMS2P54278 862 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 MLLT6P55198 1093 aaPredicted RBP10.56□□□□□ -0.72
VPS53-202ENST00000389040 SKOR1P84550 965 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 CYP4F8P98187 520 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 OGDHQ02218 1023 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 FCHO2Q0JRZ9 810 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 CALCOCO2Q13137 446 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 PIGHQ14442 188 aaPredicted RBP10.56□□□□□ -0.72
VPS53-202ENST00000389040 ZSCAN26Q16670 478 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 DNAJC21Q5F1R6 531 aaKnown RBP10.56□□□□□ -0.72
VPS53-202ENST00000389040 MSANTD2Q6P1R3 559 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 OLFML1Q6UWY5 402 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 BHLHA9Q7RTU4 235 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 UBALD2Q8IYN6 164 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 RCOR2Q8IZ40 523 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 NIPA2Q8N8Q9 360 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 ING5Q8WYH8 240 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 OTUB2Q96DC9 234 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 RBM41Q96IZ5 413 aaKnown RBP10.56□□□□□ -0.72
VPS53-202ENST00000389040 PABPC3Q9H361 631 aaKnown RBP10.56□□□□□ -0.72
VPS53-202ENST00000389040 KCNK12Q9HB15 430 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 WHRNQ9P202 907 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 LIMD1Q9UGP4 676 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 ZNF510Q9Y2H8 683 aa10.56□□□□□ -0.72
VPS53-202ENST00000389040 R3HDM2Q9Y2K5 976 aaKnown RBP10.56□□□□□ -0.72
VPS53-202ENST00000389040 PTPRDP23468 1912 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 C2orf78A6NCI8 922 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 SLC9A3R1O14745 358 aaPredicted RBP10.55□□□□□ -0.72
VPS53-202ENST00000389040 GAS8O95995 478 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 TCF4P15884 667 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 GJA1P17302 382 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 PSMC3P17980 439 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 CETN2P41208 172 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 EIF3BP55884 814 aaKnown RBP10.55□□□□□ -0.72
VPS53-202ENST00000389040 TDGQ13569 410 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 PTK6Q13882 451 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 CCNG2Q16589 344 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 ACBD5Q5T8D3 534 aaPredicted RBP10.55□□□□□ -0.72
VPS53-202ENST00000389040 EMC10Q5UCC4 262 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 KDM7AQ6ZMT4 941 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 ANKS1BQ7Z6G8 1248 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 ATL2Q8NHH9 583 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 ADAMTS19Q8TE59 1207 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 PKNOX2Q96KN3 472 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 CAPS2Q9BXY5 557 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 RNF38Q9H0F5 515 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 EPB41L4BQ9H329 900 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 CENPHQ9H3R5 247 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 NMUR1Q9HB89 426 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 TRPC7Q9HCX4 862 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 KLHL11Q9NVR0 708 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 TBC1D14Q9P2M4 693 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 SORCS3Q9UPU3 1222 aa10.55□□□□□ -0.72
VPS53-202ENST00000389040 HBS1LQ9Y450 684 aaKnown RBP10.55□□□□□ -0.72
VPS53-202ENST00000389040 E2F8A0AVK6 867 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 SIGLEC16A6NMB1 481 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 GOLGA8SH3BPF8 625 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 CAPN9O14815 690 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 CHADO15335 359 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 KRT1P04264 644 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 ERBB2P04626 1255 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 NUDT17P0C025 328 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 KRT3P12035 628 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 NCAM1P13591 858 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 DESP17661 470 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 NR1D1P20393 614 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 FCARP24071 287 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 NOS2P35228 1153 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 PFKPQ01813 784 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 IFFO1Q0D2I5 559 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 SLMAPQ14BN4 828 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 C10orf120Q5SQS8 335 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 ZFYVE27Q5T4F4 411 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 DENND2CQ68D51 928 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 OR6B2Q6IFH4 312 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 C1orf228Q6PIY5 440 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 XYLT1Q86Y38 959 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 ARL14EPQ8N8R7 260 aaPredicted RBP10.54□□□□□ -0.72
VPS53-202ENST00000389040 BPIFB1Q8TDL5 484 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 USP13Q92995 863 aaPredicted RBP10.54□□□□□ -0.72
VPS53-202ENST00000389040 FAM149B1Q96BN6 582 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 SNF8Q96H20 258 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 CCDC114Q96M63 670 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 SLC2A13Q96QE2 648 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 UHRF1Q96T88 793 aaPredicted RBP10.54□□□□□ -0.72
VPS53-202ENST00000389040 TRMT61BQ9BVS5 477 aaKnown RBP10.54□□□□□ -0.72
VPS53-202ENST00000389040 OSER1Q9NX31 292 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 MARCH2Q9P0N8 246 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms