RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 PLXNA1Q9UIW2 1896 aa11.41□□□□□ -0.58
CCDC40-203ENST00000374877 SMIM31A0A1B0GVY4 71 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 FAM159BA6NKW6 160 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 METTL18O95568 372 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 GABRB2P47870 512 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 CRADDP78560 199 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 ZNF667Q5HYK9 610 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 FRMD7Q6ZUT3 714 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 MAVSQ7Z434 540 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 C10orf107Q8IVU9 208 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 SLC4A11Q8NBS3 891 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 NPLOC4Q8TAT6 608 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 ATP2A3Q93084 1043 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 CFHR5Q9BXR6 569 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 MRPL4Q9BYD3 311 aaKnown RBP11.4□□□□□ -0.58
CCDC40-203ENST00000374877 NIFKQ9BYG3 293 aaKnown RBP11.4□□□□□ -0.58
CCDC40-203ENST00000374877 PIH1D1Q9NWS0 290 aaKnown RBP11.4□□□□□ -0.58
CCDC40-203ENST00000374877 SF3B1O75533 1304 aaKnown RBP eCLIP11.4□□□□□ -0.58
CCDC40-203ENST00000374877 hCG_2014768A0A024R1R8 64 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 TPP1O14773 563 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 OGTO15294 1046 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 ITGAXP20702 1163 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 RGS2P41220 211 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 SLC26A2P50443 739 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 ZNF143P52747 638 aaPredicted RBP11.4□□□□□ -0.58
CCDC40-203ENST00000374877 SH3BGRP55822 239 aaPredicted RBP11.4□□□□□ -0.58
CCDC40-203ENST00000374877 GRM2Q14416 872 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 PGM2L1Q6PCE3 622 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 PLPPR4Q7Z2D5 763 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 PHTF2Q8N3S3 785 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 ANKRD36BP1Q96IX9 119 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 PIWIL1Q96J94 861 aaKnown RBP11.4□□□□□ -0.58
CCDC40-203ENST00000374877 CAPNS2Q96L46 248 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 SIGLEC10Q96LC7 697 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 SIKE1Q9BRV8 207 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 CNPY3Q9BT09 278 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 MAN1C1Q9NR34 630 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 GMPRP36959 345 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 XIAPP98170 497 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 PTPN11Q06124 597 aaPredicted RBP11.4□□□□□ -0.58
CCDC40-203ENST00000374877 BSPRYQ5W0U4 402 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 IQSEC1Q6DN90 963 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 AGR3Q8TD06 166 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 PRPF31Q8WWY3 499 aaKnown RBP11.4□□□□□ -0.58
CCDC40-203ENST00000374877 LRRC39Q96DD0 335 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 ZIC5Q96T25 663 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 PCYT2Q99447 389 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 TMEM134Q9H6X4 195 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 NRDE2Q9H7Z3 1164 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 EMCNQ9ULC0 261 aa11.4□□□□□ -0.58
CCDC40-203ENST00000374877 E9PBE3 544 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 KLHL41O60662 606 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 GLRA3O75311 464 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 GSRP00390 522 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 IGHA2P01877 340 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 SERPINE1P05121 402 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 ATP6V1B1P15313 513 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 PMLP29590 882 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 L1CAMP32004 1257 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 DEUP1Q05D60 604 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 ARHGAP1Q07960 439 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 USP4Q13107 963 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 ACAP1Q15027 740 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 TRNP1Q6NT89 227 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 UGT2A3Q6UWM9 527 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 ZPBP2Q6X784 338 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 RBM44Q6ZP01 1051 aaKnown RBP11.39□□□□□ -0.59
CCDC40-203ENST00000374877 CYP4V2Q6ZWL3 525 aaPredicted RBP11.39□□□□□ -0.59
CCDC40-203ENST00000374877 FBXW8Q8N3Y1 598 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 TFB1MQ8WVM0 346 aaKnown RBP11.39□□□□□ -0.59
CCDC40-203ENST00000374877 MCRS1Q96EZ8 462 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 APBA2Q99767 749 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 PREBQ9HCU5 417 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 NRBP2Q9NSY0 501 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 NOP56O00567 594 aaKnown RBP11.39□□□□□ -0.59
CCDC40-203ENST00000374877 FAM189A1O60320 539 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 PLIN3O60664 434 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 ENDOD1O94919 500 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 TCF7P36402 384 aaPredicted RBP11.39□□□□□ -0.59
CCDC40-203ENST00000374877 FDFT1P37268 417 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 ALDH1A3P47895 512 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 STAT5BP51692 787 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 PDE1CQ14123 709 aaPredicted RBP11.39□□□□□ -0.59
CCDC40-203ENST00000374877 PCLAFQ15004 111 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 TLR1Q15399 786 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 CNGA3Q16281 694 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 PABPC1LQ4VXU2 614 aaKnown RBP11.39□□□□□ -0.59
CCDC40-203ENST00000374877 FAM43BQ6ZT52 329 aaPredicted RBP11.39□□□□□ -0.59
CCDC40-203ENST00000374877 ZNF534Q76KX8 674 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 TMC7Q7Z402 723 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 PQLC3Q8N755 202 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 HEXIM2Q96MH2 286 aaKnown RBP11.39□□□□□ -0.59
CCDC40-203ENST00000374877 SPATA33Q96N06 139 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 RNPEPQ9H4A4 650 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 STN1Q9H668 368 aaKnown RBP11.39□□□□□ -0.59
CCDC40-203ENST00000374877 PDGFCQ9NRA1 345 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 GJD2Q9UKL4 321 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 PCDHA11Q9Y5I1 949 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 NR2E3Q9Y5X4 410 aa11.39□□□□□ -0.59
CCDC40-203ENST00000374877 WDR27A2RRH5 827 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms