RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 CASKIN2Q8WXE0 1202 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 PMM1Q92871 262 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 ZNF622Q969S3 477 aaKnown RBP eCLIP5.19□□□□□ -1.588e-19■□□□□ 10.2
USP48-202ENST00000374730 RPGRIP1Q96KN7 1286 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 NEU1Q99519 415 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 ADAM2Q99965 735 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 ADI1Q9BV57 179 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 TEX101Q9BY14 249 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 WDR11Q9BZH6 1224 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 TSGA10Q9BZW7 698 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 NDST4Q9H3R1 872 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 DBNDD1Q9H9R9 158 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 SYBUQ9NX95 663 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 GABBR1Q9UBS5 961 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 HERC5Q9UII4 1024 aaKnown RBP5.19□□□□□ -1.58
USP48-202ENST00000374730 MCM8Q9UJA3 840 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 RAB21Q9UL25 225 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 PCDHA12Q9UN75 941 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 ATP11BQ9Y2G3 1177 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 USP15Q9Y4E8 981 aaPredicted RBP5.19□□□□□ -1.58
USP48-202ENST00000374730 PCDHA1Q9Y5I3 950 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 FER1L6Q2WGJ9 1857 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 WDR81Q562E7 1941 aa5.19□□□□□ -1.58
USP48-202ENST00000374730 PARP14Q460N5 1801 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 BRCA1P38398 1863 aaKnown RBP5.18□□□□□ -1.58
USP48-202ENST00000374730 PIPSLA2A3N6 862 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 CTAGE15A4D2H0 777 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 FAM171A2A8MVW0 826 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 F5H6K3 240 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 KRT86O43790 486 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 NDUFB10O96000 172 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 CFIP05156 583 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 CYP3A4P08684 503 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 PLA2G4BP0C869 781 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 CTAGE8P0CG41 777 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 IDEP14735 1019 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 CYP11B2P19099 503 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 CNGA1P29973 690 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 KLK7P49862 253 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 SLC12A3P55017 1021 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 PER3P56645 1201 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 ERVK-21P61565 698 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 FKBP3Q00688 224 aaKnown RBP5.18□□□□□ -1.58
USP48-202ENST00000374730 CKAP4Q07065 602 aaKnown RBP5.18□□□□□ -1.58
USP48-202ENST00000374730 KLRC3Q07444 240 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 TCP10Q12799 353 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 EDRF1Q3B7T1 1238 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 BRDTQ58F21 947 aaPredicted RBP5.18□□□□□ -1.58
USP48-202ENST00000374730 ABHD17BQ5VST6 288 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 PAPD7Q5XG87 772 aaKnown RBP5.18□□□□□ -1.58
USP48-202ENST00000374730 AFMIDQ63HM1 303 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 ZNF772Q68DY9 489 aaPredicted RBP5.18□□□□□ -1.58
USP48-202ENST00000374730 USP17L6PQ6QN14 398 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 KIAA1328Q86T90 577 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 CTAGE6Q86UF2 777 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 GPBP1Q86WP2 473 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 CTAGE4Q8IX94 777 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 TXLNBQ8N3L3 684 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 ERMNQ8TAM6 284 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 SYN2Q92777 582 aaPredicted RBP5.18□□□□□ -1.58
USP48-202ENST00000374730 HPS3Q969F9 1004 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 JAKMIP2Q96AA8 810 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 FAM20AQ96MK3 541 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 PARD6BQ9BYG5 372 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 UBXN6Q9BZV1 441 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 REXO4Q9GZR2 422 aaKnown RBP5.18□□□□□ -1.58
USP48-202ENST00000374730 ANKZF1Q9H8Y5 726 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 NHEJ1Q9H9Q4 299 aaPredicted RBP5.18□□□□□ -1.58
USP48-202ENST00000374730 ARFGAP3Q9NP61 516 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 DMRT3Q9NQL9 472 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 AGPAT5Q9NUQ2 364 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 PANK4Q9NVE7 773 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 DNAJC28Q9NX36 388 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 ANKFY1Q9P2R3 1169 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 MYO6Q9UM54 1294 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 PCDHAC2Q9Y5I4 1007 aa5.18□□□□□ -1.58
USP48-202ENST00000374730 E9PMD0 336 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 MAP2K7O14733 419 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 PLA2G6O60733 806 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 MED24O75448 989 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 ERLIN1O75477 346 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 POU3F3P20264 500 aaPredicted RBP5.17□□□□□ -1.58
USP48-202ENST00000374730 BMP5P22003 454 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 MUTP22033 750 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 RPA1P27694 616 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 CDKN1CP49918 316 aaPredicted RBP5.17□□□□□ -1.58
USP48-202ENST00000374730 RBM5P52756 815 aaKnown RBP eCLIP5.17□□□□□ -1.58
USP48-202ENST00000374730 CACNB3P54284 484 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 ITIH3Q06033 890 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 KIF5AQ12840 1032 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 SPA17Q15506 151 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 NFE2Q16621 373 aaPredicted RBP5.17□□□□□ -1.58
USP48-202ENST00000374730 SHROOM1Q2M3G4 852 aaPredicted RBP5.17□□□□□ -1.58
USP48-202ENST00000374730 CCDC40Q4G0X9 1142 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 CCDC122Q5T0U0 273 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 FKBP1CQ5VVH2 108 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 WDR93Q6P2C0 686 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 PDXDC1Q6P996 788 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 SEM1Q6ZVN7 128 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 EPM2AIP1Q7L775 607 aaPredicted RBP5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms