RNA–Protein interactions for RNA: ENST00000373548.7

HDAC1-201, Transcript of histone deacetylase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC1, Length 2,124 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-201ENST00000373548 STKLD1Q8NE28 680 aa20.17■□□□□ 0.82
HDAC1-201ENST00000373548 SMC6Q96SB8 1091 aa20.17■□□□□ 0.82
HDAC1-201ENST00000373548 NMUR1Q9HB89 426 aa20.17■□□□□ 0.82
HDAC1-201ENST00000373548 ADAM28Q9UKQ2 775 aa20.17■□□□□ 0.82
HDAC1-201ENST00000373548 SHROOM3Q8TF72 1996 aa20.17■□□□□ 0.82
HDAC1-201ENST00000373548 PLXNA3P51805 1871 aa20.16■□□□□ 0.82
HDAC1-201ENST00000373548 ANKRD65E5RJM6 399 aa20.16■□□□□ 0.82
HDAC1-201ENST00000373548 CPP00450 1065 aa20.16■□□□□ 0.82
HDAC1-201ENST00000373548 VIMP08670 466 aaKnown RBP20.16■□□□□ 0.82
HDAC1-201ENST00000373548 EPHB2P29323 1055 aa20.16■□□□□ 0.82
HDAC1-201ENST00000373548 STX2P32856 288 aa20.16■□□□□ 0.82
HDAC1-201ENST00000373548 WDR4P57081 412 aaKnown RBP20.16■□□□□ 0.82
HDAC1-201ENST00000373548 NFE2Q16621 373 aaPredicted RBP20.16■□□□□ 0.82
HDAC1-201ENST00000373548 GKAP1Q5VSY0 366 aaPredicted RBP20.16■□□□□ 0.82
HDAC1-201ENST00000373548 SDHAF4Q5VUM1 108 aa20.16■□□□□ 0.82
HDAC1-201ENST00000373548 MPP5Q8N3R9 675 aa20.16■□□□□ 0.82
HDAC1-201ENST00000373548 DENND1AQ8TEH3 1009 aa20.16■□□□□ 0.82
HDAC1-201ENST00000373548 SLC44A1Q8WWI5 657 aa20.16■□□□□ 0.82
HDAC1-201ENST00000373548 SGSM3Q96HU1 749 aa20.16■□□□□ 0.82
HDAC1-201ENST00000373548 FUBP3Q96I24 572 aaKnown RBP eCLIP20.16■□□□□ 0.82
HDAC1-201ENST00000373548 OSBPL2Q9H1P3 480 aa20.16■□□□□ 0.82
HDAC1-201ENST00000373548 SMOC2Q9H3U7 446 aa20.16■□□□□ 0.82
HDAC1-201ENST00000373548 ARHGEF38Q9NXL2 777 aa20.16■□□□□ 0.82
HDAC1-201ENST00000373548 HCSTQ9UBK5 93 aa20.16■□□□□ 0.82
HDAC1-201ENST00000373548 KCNK1O00180 336 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 PITPNM1O00562 1244 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 PSMB4P28070 264 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 GPR15P49685 360 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 SLC18A1P54219 525 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 CDK16Q00536 496 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 PPIDQ08752 370 aaKnown RBP20.15■□□□□ 0.82
HDAC1-201ENST00000373548 FAM171A1Q5VUB5 890 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 C6orf89Q6UWU4 347 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 PDCD7Q8N8D1 485 aaKnown RBP20.15■□□□□ 0.82
HDAC1-201ENST00000373548 SEPT8Q92599 483 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 CASP10Q92851 521 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 GPR62Q9BZJ7 368 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 EIF2B3Q9NR50 452 aaKnown RBP20.15■□□□□ 0.82
HDAC1-201ENST00000373548 SFMBT1Q9UHJ3 866 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 SMG5Q9UPR3 1016 aaKnown RBP20.15■□□□□ 0.82
HDAC1-201ENST00000373548 A0A1W2PQH9 124 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 TCP11X1B4DZS4 312 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 NCAM2O15394 837 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 MSI1O43347 362 aaKnown RBP20.15■□□□□ 0.82
HDAC1-201ENST00000373548 TYROBPO43914 113 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 MYCP01106 439 aaPredicted RBP20.15■□□□□ 0.82
HDAC1-201ENST00000373548 MRPL58Q14197 206 aaKnown RBP20.15■□□□□ 0.82
HDAC1-201ENST00000373548 DDR2Q16832 855 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 PARP6Q2NL67 630 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 CTXN3Q4LDR2 81 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 UNC5AQ6ZN44 842 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 MICALCLQ6ZW33 695 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 CEP57Q86XR8 500 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 CACNA2D3Q8IZS8 1091 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 B3GALT6Q96L58 329 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 C8orf48Q96LL4 319 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 EBNA1BP2Q99848 306 aaKnown RBP20.15■□□□□ 0.82
HDAC1-201ENST00000373548 TRIM56Q9BRZ2 755 aaKnown RBP20.15■□□□□ 0.82
HDAC1-201ENST00000373548 MARCH5Q9NX47 278 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 NEU3Q9UQ49 428 aa20.15■□□□□ 0.82
HDAC1-201ENST00000373548 PTPN3P26045 913 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 CYP2C18P33260 490 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 GALNT2Q10471 571 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 BRMS1LQ5PSV4 323 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 PIGWQ7Z7B1 504 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 PGLYRP2Q96PD5 576 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 OSER1Q9NX31 292 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 IGSF9Q9P2J2 1179 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 PCDHB5Q9Y5E4 795 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 MAD1L1Q9Y6D9 718 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 ATXN2Q99700 1313 aaKnown RBP20.14■□□□□ 0.81
HDAC1-201ENST00000373548 GSTA2P09210 222 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 MLNP12872 115 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 KRT4P19013 534 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 PRKCHP24723 683 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 SLC11A1P49279 550 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 SARNPP82979 210 aaKnown RBP20.14■□□□□ 0.81
HDAC1-201ENST00000373548 NUP93Q8N1F7 819 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 CRIPAKQ8N1N5 446 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 TTC9BQ8N6N2 239 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 DEPDC1BQ8WUY9 529 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 HDAC11Q96DB2 347 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 SIK2Q9H0K1 926 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 SSU72Q9NP77 194 aaKnown RBP20.14■□□□□ 0.81
HDAC1-201ENST00000373548 PAK6Q9NQU5 681 aaPredicted RBP20.14■□□□□ 0.81
HDAC1-201ENST00000373548 NUDT5Q9UKK9 219 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 LRFN2Q9ULH4 789 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 SCML2Q9UQR0 700 aa20.14■□□□□ 0.81
HDAC1-201ENST00000373548 TANC1Q9C0D5 1861 aa20.13■□□□□ 0.81
HDAC1-201ENST00000373548 TRDMT1O14717 391 aaKnown RBP20.13■□□□□ 0.81
HDAC1-201ENST00000373548 PQBP1O60828 265 aaKnown RBP20.13■□□□□ 0.81
HDAC1-201ENST00000373548 ZNF189O75820 626 aaPredicted RBP20.13■□□□□ 0.81
HDAC1-201ENST00000373548 ASMTLO95671 621 aa20.13■□□□□ 0.81
HDAC1-201ENST00000373548 APOEP02649 317 aa20.13■□□□□ 0.81
HDAC1-201ENST00000373548 SERPINB6P35237 376 aa20.13■□□□□ 0.81
HDAC1-201ENST00000373548 RPA3P35244 121 aaPredicted RBP20.13■□□□□ 0.81
HDAC1-201ENST00000373548 PID1Q7Z2X4 250 aa20.13■□□□□ 0.81
HDAC1-201ENST00000373548 MAGEB18Q96M61 343 aa20.13■□□□□ 0.81
HDAC1-201ENST00000373548 DEFB118Q96PH6 123 aa20.13■□□□□ 0.81
HDAC1-201ENST00000373548 HAPLN3Q96S86 360 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms