RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 POU1F1P28069 291 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 DSG3P32926 999 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 VAC14Q08AM6 782 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 ADIGQ0VDE8 80 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 DPYSL3Q14195 570 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 ZNF284Q2VY69 593 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 FAM98BQ52LJ0 330 aaKnown RBP11.68□□□□□ -0.54
PTPRF-203ENST00000372407 RIPOR1Q6ZS17 1223 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 DHFR2Q86XF0 187 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 SCUBE3Q8IX30 993 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 KRT78Q8N1N4 520 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 EDEM1Q92611 657 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 MTERF3Q96E29 417 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 EMILIN2Q9BXX0 1053 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 MYLK2Q9H1R3 596 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 COMMD8Q9NX08 183 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 PCYOX1Q9UHG3 505 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 GGA2Q9UJY4 613 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 NDUFAF1Q9Y375 327 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 ZNF839A8K0R7 811 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 DLGAP3O95886 979 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 LDLRP01130 860 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 LRG1P02750 347 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 CYP1A1P04798 512 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-203ENST00000372407 CCT8P50990 548 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 FKBP1AP62942 108 aaKnown RBP11.68□□□□□ -0.54
PTPRF-203ENST00000372407 TTMPQ5BVD1 217 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 LRRC38Q5VT99 294 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 ZNF470Q6ECI4 717 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 PLEKHA7Q6IQ23 1121 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 IRGCQ6NXR0 463 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 PRMT9Q6P2P2 845 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 TRAF7Q6Q0C0 670 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 RMND5BQ96G75 393 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-203ENST00000372407 SCUBE2Q9NQ36 999 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 GEMIN8Q9NWZ8 242 aaKnown RBP11.68□□□□□ -0.54
PTPRF-203ENST00000372407 SNTG2Q9NY99 539 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 KCNK4Q9NYG8 393 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 TMEM150BA6NC51 233 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 RAMP2O60895 175 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 MICAL2O94851 1124 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 ENDOD1O94919 500 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 TNFAIP8O95379 198 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 RBL1P28749 1068 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 HNRNPH3P31942 346 aaKnown RBP11.68□□□□□ -0.54
PTPRF-203ENST00000372407 SOX6P35712 828 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 KPNA1P52294 538 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-203ENST00000372407 SLC6A3Q01959 620 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.68□□□□□ -0.54
PTPRF-203ENST00000372407 AUHQ13825 339 aaKnown RBP11.68□□□□□ -0.54
PTPRF-203ENST00000372407 FASTKQ14296 549 aaKnown RBP11.68□□□□□ -0.54
PTPRF-203ENST00000372407 TCHHL1Q5QJ38 904 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-203ENST00000372407 ZNF280DQ6N043 979 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 CHADLQ6NUI6 762 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 LPCAT2Q7L5N7 544 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 ZNF467Q7Z7K2 595 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-203ENST00000372407 C11orf96Q7Z7L8 435 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 SNX32Q86XE0 403 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 DEFB106AQ8N104 65 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 RNF148Q8N7C7 305 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 B3GALNT2Q8NCR0 500 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 REPS2Q8NFH8 660 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 ZBTB45Q96K62 511 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-203ENST00000372407 DPY30Q9C005 99 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 PDGFDQ9GZP0 370 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-203ENST00000372407 WDR41Q9HAD4 459 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 RNPEPL1Q9HAU8 725 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 NMRAL1Q9HBL8 299 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 TAS2R13Q9NYV9 303 aa11.68□□□□□ -0.54
PTPRF-203ENST00000372407 C6orf203Q9P0P8 240 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-203ENST00000372407 ADM5C9JUS6 153 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 SLC16A1P53985 500 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 NAB1Q13506 487 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 CAMK2GQ13555 558 aaPredicted RBP11.67□□□□□ -0.54
PTPRF-203ENST00000372407 CNGA2Q16280 664 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 ARHGAP15Q53QZ3 475 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 OVOS1Q6IE37 1185 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 SLC27A1Q6PCB7 646 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 PGBD3Q8N328 593 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 FBXO39Q8N4B4 442 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 GLIS3Q8NEA6 775 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 GDPD5Q8WTR4 605 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 DNAJC19Q96DA6 116 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 CDRT15Q96T59 188 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 SEPHS2Q99611 448 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 KCTD14Q9BQ13 255 aaPredicted RBP11.67□□□□□ -0.54
PTPRF-203ENST00000372407 SLC25A23Q9BV35 468 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 DDX4Q9NQI0 724 aaKnown RBP11.67□□□□□ -0.54
PTPRF-203ENST00000372407 COPG2Q9UBF2 871 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 SORCS3Q9UPU3 1222 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 GNG14A0A1W2PPG7 69 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 GLTPD2A6NH11 291 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 TBC1D12O60347 775 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 PROCP04070 461 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 MBL2P11226 248 aaPredicted RBP11.67□□□□□ -0.54
PTPRF-203ENST00000372407 TAL1P17542 331 aaPredicted RBP11.67□□□□□ -0.54
PTPRF-203ENST00000372407 KDELR1P24390 212 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 ZNF135P52742 658 aaPredicted RBP11.67□□□□□ -0.54
PTPRF-203ENST00000372407 OAZ1P54368 228 aa11.67□□□□□ -0.54
PTPRF-203ENST00000372407 SAMD4BQ5PRF9 694 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms