RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 DNAJB4Q9UDY4 337 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 TSPAN16Q9UKR8 245 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 NUMBLQ9Y6R0 609 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 OAS1P00973 400 aaKnown RBP10.42□□□□□ -0.74
SYNE1-203ENST00000354674 CALB1P05937 261 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 PDGFRBP09619 1106 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 CSF2RAP15509 400 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 STT3AP46977 705 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 KCNJ1P48048 391 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 TRIP13Q15645 432 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-203ENST00000354674 ANKDD1AQ495B1 522 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 C11orf63Q6NUN7 778 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 ABI1Q8IZP0 508 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 B3GALNT2Q8NCR0 500 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 CFAP61Q8NHU2 1237 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 TOP1MTQ969P6 601 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 ZNF689Q96CS4 500 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-203ENST00000354674 FAM161BQ96MY7 647 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 CADM1Q9BY67 442 aaKnown RBP10.42□□□□□ -0.74
SYNE1-203ENST00000354674 KLHL4Q9C0H6 718 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 PABPC3Q9H361 631 aaKnown RBP10.42□□□□□ -0.74
SYNE1-203ENST00000354674 PCDHB8Q9UN66 801 aa10.42□□□□□ -0.74
SYNE1-203ENST00000354674 A8MU76 341 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 E7ENQ6 273 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 F8W810 466 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 PDLIM1O00151 329 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 GYG2O15488 501 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 ATMINO43313 823 aaPredicted RBP10.41□□□□□ -0.74
SYNE1-203ENST00000354674 BAIAP3O94812 1187 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 GJB6O95452 261 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 PSMG1O95456 288 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 EFEMP2O95967 443 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 CCNB1P14635 433 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 RAG1P15918 1043 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 PTPN1P18031 435 aaKnown RBP10.41□□□□□ -0.74
SYNE1-203ENST00000354674 RRM1P23921 792 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 BRCC3P46736 316 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 C16orf72Q14CZ0 275 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 PTPN20Q4JDL3 420 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 LPCAT4Q643R3 524 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 TTC30AQ86WT1 665 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 AGGF1Q8N302 714 aaeCLIP10.41□□□□□ -0.74
SYNE1-203ENST00000354674 SHKBP1Q8TBC3 707 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 SLC35F5Q8WV83 523 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 PKMYT1Q99640 499 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 HNRNPABQ99729 332 aaKnown RBP10.41□□□□□ -0.74
SYNE1-203ENST00000354674 DRC3Q9H069 523 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 LRMDAQ9H2I8 198 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 C12orf65Q9H3J6 166 aaKnown RBP10.41□□□□□ -0.74
SYNE1-203ENST00000354674 DDX43Q9NXZ2 648 aaKnown RBP10.41□□□□□ -0.74
SYNE1-203ENST00000354674 CDH9Q9ULB4 789 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 A0A0G2JND7 137 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 ARHGEF37A1IGU5 675 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 M0QYV0 167 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 DR1Q01658 176 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 MAMLD1Q13495 774 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 SEPT7Q16181 437 aaKnown RBP10.41□□□□□ -0.74
SYNE1-203ENST00000354674 GOLGA7BQ2TAP0 167 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 LIN9Q5TKA1 542 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 SYCE1Q8N0S2 351 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 ANKRD52Q8NB46 1076 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 C18orf8Q96DM3 657 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 LPIN3Q9BQK8 851 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 ACBD6Q9BR61 282 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 C11orf70Q9BRQ4 267 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 OSBPL10Q9BXB5 764 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 IL23AQ9NPF7 189 aa10.41□□□□□ -0.74
SYNE1-203ENST00000354674 NRP1O14786 923 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 NAT2P11245 290 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 FAM171BQ6P995 826 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 PAQR9Q6ZVX9 377 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 LRRC43Q8N309 656 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 ZNF564Q8TBZ8 553 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-203ENST00000354674 FAM193BQ96PV7 902 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-203ENST00000354674 HAPLN3Q96S86 360 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 CPXM1Q96SM3 734 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 CRTAC1Q9NQ79 661 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 PRDM5Q9NQX1 630 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-203ENST00000354674 MARCH5Q9NX47 278 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 ARMCX1Q9P291 453 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 PCDHGB4Q9UN71 923 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 PCDHGB5Q9Y5G0 923 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 GMEB1Q9Y692 573 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 WDR5P61964 334 aaKnown RBP10.4□□□□□ -0.74
SYNE1-203ENST00000354674 PLCB3Q01970 1234 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 CYLC2Q14093 348 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-203ENST00000354674 KLC3Q6P597 504 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 C16orf59Q7L2K0 433 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 TAOK1Q7L7X3 1001 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 NT5DC3Q86UY8 548 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 RASSF3Q86WH2 238 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 GIPC3Q8TF64 312 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 NAP1L3Q99457 506 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-203ENST00000354674 SLC4A5Q9BY07 1137 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 CWH43Q9H720 699 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 CYLDQ9NQC7 956 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 FAM49BQ9NUQ9 324 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 PARVAQ9NVD7 372 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 ZFP69BQ9UJL9 534 aa10.4□□□□□ -0.74
SYNE1-203ENST00000354674 STRIP2Q9ULQ0 834 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms