RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 GRIK1P39086 918 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 GLRBP48167 497 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 RGS7P49802 495 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 RPS6P62753 249 aaKnown RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 MAD2L1Q13257 205 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 LAMC2Q13753 1193 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 ACSBG2Q5FVE4 666 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 TRIM69Q86WT6 500 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 SETD9Q8NE22 299 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 HOPXQ9BPY8 73 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 ARL8BQ9NVJ2 186 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 TAS2R1Q9NYW7 299 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 BARX2Q9UMQ3 279 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 ADGRA2Q96PE1 1338 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 SIPA1L3O60292 1781 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 CLOCKO15516 846 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 PEX11AO75192 247 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 MAP3K6O95382 1288 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 ATP6V1B2P21281 511 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 KLRK1P26718 216 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 POLD1P28340 1107 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 RAB14P61106 215 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 NANOGNBQ7Z5D8 188 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 FAXDC2Q96IV6 333 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 FAM193BQ96PV7 902 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 IARS2Q9NSE4 1012 aaKnown RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 PCDHGB4Q9UN71 923 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 SPDYE2BA6NHP3 402 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 INPP4BO15327 924 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 MYO1DO94832 1006 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 PYGLP06737 847 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 SPDYE6P0CI01 402 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 TUBA4AP68366 448 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 PURAQ00577 322 aaKnown RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 BNIP2Q12982 314 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 ZNF846Q147U1 533 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 NR1D2Q14995 579 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 SLC1A5Q15758 541 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 AGKQ53H12 422 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 ZC3H12AQ5D1E8 599 aaKnown RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 ZNF618Q5T7W0 954 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 MPZL3Q6UWV2 235 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 PACS1Q6VY07 963 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 MON1BQ7L1V2 547 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 VPS37AQ8NEZ2 397 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 TRHDEQ9UKU6 1024 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 C10orf71Q711Q0 1435 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 WDR27A2RRH5 827 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 TRIM38O00635 465 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 PSMD10O75832 226 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 F9P00740 461 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 SNRPB2P08579 225 aaKnown RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 CLCN2P51788 898 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 TSPY1Q01534 308 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 SMAD1Q15797 465 aaKnown RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 BROXQ5VW32 411 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 CATSPER4Q7RTX7 472 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 TTC7BQ86TV6 843 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 HPS6Q86YV9 775 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 ACTRT2Q8TDY3 377 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 ZNF670Q9BS34 389 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 THUMPD3Q9BV44 507 aaKnown RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 MTF2Q9Y483 593 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 MYH9P35579 1960 aaKnown RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 M0QYT0 321 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 ZNF862O60290 1169 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 FKBP9O95302 570 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 ACTR3P61158 418 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 CCDC85BQ15834 202 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 DDR2Q16832 855 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 C6orf10Q5SRN2 563 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 FKBP9P1Q75LS8 142 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 KDELC2Q7Z4H8 507 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 NSMCE2Q96MF7 247 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 RNF112Q9ULX5 631 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 SLIT2O94813 1529 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 PRR5-ARHGAP8B1AHC4 643 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 SIN3BO75182 1162 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 TBX10O75333 385 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 NDUFS3O75489 264 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 ST13P50502 369 aaKnown RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 NAA20P61599 178 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 ARHGAP8P85298 464 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 CDK18Q07002 472 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 DMPKQ09013 629 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 PGM5Q15124 567 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 DGKDQ16760 1214 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 EFCAB12Q6NXP0 572 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 PNPT1Q8TCS8 783 aaKnown RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 FAM151AQ8WW52 585 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 VAT1Q99536 393 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 RMND5AQ9H871 391 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 SLC17A7Q9P2U7 560 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 SESN1Q9Y6P5 492 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 RNF103O00237 685 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 CD3EAPO15446 510 aaKnown RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 MIPP30301 263 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 RPL22P35268 128 aaKnown RBP4.89□□□□□ -1.63
CSMD3-203ENST00000343508 RXRGP48443 463 aa4.89□□□□□ -1.63
CSMD3-203ENST00000343508 EEPD1Q7L9B9 569 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms