RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 RNASEH2BQ5TBB1 312 aaKnown RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 MANEALQ5VSG8 457 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 PLPP4Q5VZY2 271 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 RWDD4Q6NW29 188 aaKnown RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 MTERF4Q7Z6M4 381 aaKnown RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 TMEM150AQ86TG1 271 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 TCEAL8Q8IYN2 117 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 IQCKQ8N0W5 287 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 MREGQ8N565 214 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 UHMK1Q8TAS1 419 aaKnown RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 CCDC110Q8TBZ0 833 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 UBLCP1Q8WVY7 318 aaPredicted RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.27□□□□□ -1.73
MCF2-201ENST00000338585 CPT1BQ92523 772 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 MYEOVQ96EZ4 313 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 CELF6Q96J87 481 aaKnown RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 ZIM3Q96PE6 472 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 QKIQ96PU8 341 aaKnown RBP eCLIP4.27□□□□□ -1.73
MCF2-201ENST00000338585 EPAS1Q99814 870 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 LBHD1Q9BQE6 289 aaPredicted RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 UBE2OQ9C0C9 1292 aaKnown RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 OSBPL2Q9H1P3 480 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 SEMA4AQ9H3S1 761 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 PRDM12Q9H4Q4 367 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 RXFP1Q9HBX9 757 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 NDFIP2Q9NV92 336 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 MPP6Q9NZW5 540 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 FNIP2Q9P278 1114 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 CEP290O15078 2479 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 NUP205Q92621 2012 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 GOLGA6L7A0A1B0GV03 622 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 BCLAF3A2AJT9 711 aaKnown RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 GOLGA6BA6NDN3 693 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 E9PAM4 449 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 KCNK1O00180 336 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 SCAMP3O14828 347 aaKnown RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 GRM6O15303 877 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 BANF1O75531 89 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 TMEM63AO94886 807 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 METTL18O95568 372 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 SYF2O95926 243 aaKnown RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 IGLV3-27P01718 113 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 CA3P07451 260 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 CSH1P0DML2 217 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 CSH2P0DML3 217 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 HCAR3P49019 387 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 NR2C2P49116 596 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 NUMBP49757 651 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 PSEN1P49768 467 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 PMS2P54278 862 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 MLLT6P55198 1093 aaPredicted RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 BASP1P80723 227 aaKnown RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 AP1B1Q10567 949 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 CAMK1Q14012 370 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 SHHQ15465 462 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 MS4A13Q5J8X5 152 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 CFAP58Q5T655 872 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 DNAJB7Q7Z6W7 309 aaPredicted RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 CIR1Q86X95 450 aaPredicted RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 CDKL3Q8IVW4 592 aaPredicted RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 CCNYQ8ND76 341 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 PHOSPHO2Q8TCD6 241 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 SPPL3Q8TCT6 385 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 POF1BQ8WVV4 589 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 PRCCQ92733 491 aaPredicted RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 WBP2Q969T9 261 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 MYRFLQ96LU7 910 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 KLHL5Q96PQ7 755 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 SLC22A12Q96S37 553 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 HAPLN3Q96S86 360 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 CYP2S1Q96SQ9 504 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 HTATIP2Q9BUP3 242 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 KLC2Q9H0B6 622 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 RNF38Q9H0F5 515 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 VIPAS39Q9H9C1 493 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 ENTPD7Q9NQZ7 604 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.27□□□□□ -1.73
MCF2-201ENST00000338585 GKN1Q9NS71 199 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 OLA1Q9NTK5 396 aaKnown RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 COMMD8Q9NX08 183 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 MTRF1LQ9UGC7 380 aaKnown RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 VANGL2Q9ULK5 521 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 TPX2Q9ULW0 747 aaKnown RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 PLAAQ9Y263 795 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 CHD7Q9P2D1 2997 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 RANBP2P49792 3224 aaKnown RBP4.26□□□□□ -1.73
MCF2-201ENST00000338585 C2orf71A6NGG8 1288 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 H0YGN5 161 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 RNF103O00237 685 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 CNTN5O94779 1100 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 APOEP02649 317 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 SHBGP04278 402 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 HOXB1P14653 301 aaPredicted RBP4.26□□□□□ -1.73
MCF2-201ENST00000338585 GJA1P17302 382 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 STIP1P31948 543 aaKnown RBP4.26□□□□□ -1.73
MCF2-201ENST00000338585 ATP5C1P36542 298 aaKnown RBP4.26□□□□□ -1.73
MCF2-201ENST00000338585 MAGEA10P43363 369 aaPredicted RBP4.26□□□□□ -1.73
MCF2-201ENST00000338585 TUBP50607 506 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 EPHB3P54753 998 aa4.26□□□□□ -1.73
MCF2-201ENST00000338585 XRCC4Q13426 336 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms