RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 KPNA3O00505 521 aaPredicted RBP10.41□□□□□ -0.74
CHD3-201ENST00000330494 SLC1A6P48664 564 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 PDPK2PQ6A1A2 396 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 ZNF470Q6ECI4 717 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 ADCK1Q86TW2 530 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 CATSPER1Q8NEC5 780 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 OR5B17Q8NGF7 314 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 ACO2Q99798 780 aaKnown RBP10.41□□□□□ -0.74
CHD3-201ENST00000330494 EXOSC4Q9NPD3 245 aaKnown RBP10.41□□□□□ -0.74
CHD3-201ENST00000330494 RIPK3Q9Y572 518 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 CYP3A4P08684 503 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 MRPS6P82932 125 aaKnown RBP10.41□□□□□ -0.74
CHD3-201ENST00000330494 AGKQ53H12 422 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 DLK2Q6UY11 383 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 SLC26A11Q86WA9 606 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 PLD3Q8IV08 490 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 CORO1BQ9BR76 489 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 PCDH9Q9HC56 1237 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 RGS18Q9NS28 235 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 SHPRHQ149N8 1683 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 ZNF682O95780 498 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 APOA4P06727 396 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 SERPINF2P08697 491 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 SLC2A4P14672 509 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 PSMB4P28070 264 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 RASA2Q15283 850 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 IYDQ6PHW0 289 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 KIRREL3Q8IZU9 778 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 VPS37AQ8NEZ2 397 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 MYCBPAPQ8TBZ2 947 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 SH3GL1Q99961 368 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 NRCAMQ92823 1304 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 MGAT4DA6NG13 374 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 POTEAQ6S8J7 498 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 PRPF18Q99633 342 aaKnown RBP10.4□□□□□ -0.74
CHD3-201ENST00000330494 FAM129AQ9BZQ8 928 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 ELOVL4Q9GZR5 314 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 CAAP1Q9H8G2 361 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 FAM50BQ9Y247 325 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 ACOT9Q9Y305 439 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 DEAF1O75398 565 aaPredicted RBP10.4□□□□□ -0.74
CHD3-201ENST00000330494 PRLRP16471 622 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 MMP14P50281 582 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 IKBKEQ14164 716 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 NR6A1Q15406 480 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 TCP10LQ8TDR4 215 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 NDRG1Q92597 394 aaKnown RBP10.4□□□□□ -0.74
CHD3-201ENST00000330494 CNGB3Q9NQW8 809 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 IPPQ9Y573 584 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 ITGB5P18084 799 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 BMP6P22004 513 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 TP53BP2Q13625 1128 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 COQ7Q99807 217 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 GOLGA2P5Q9HBQ8 144 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 POPDC2Q9HBU9 364 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 MARCH2Q9P0N8 246 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 NBNO60934 754 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 HIRAP54198 1017 aaPredicted RBP10.4□□□□□ -0.74
CHD3-201ENST00000330494 SP3Q02447 781 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 PKN2Q16513 984 aaKnown RBP10.4□□□□□ -0.74
CHD3-201ENST00000330494 MARK2Q7KZI7 788 aaKnown RBP10.4□□□□□ -0.74
CHD3-201ENST00000330494 TMEM161BQ8NDZ6 487 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 NLGN2Q8NFZ4 835 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 TLR10Q9BXR5 811 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 ACTR8Q9H981 624 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 SPG21Q9NZD8 308 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 ST3GAL5Q9UNP4 418 aa10.4□□□□□ -0.74
CHD3-201ENST00000330494 DRG1Q9Y295 367 aaKnown RBP10.4□□□□□ -0.74
CHD3-201ENST00000330494 NPM3O75607 178 aaKnown RBP10.4□□□□□ -0.75
CHD3-201ENST00000330494 MCL1Q07820 350 aa10.4□□□□□ -0.75
CHD3-201ENST00000330494 DDR2Q16832 855 aa10.4□□□□□ -0.75
CHD3-201ENST00000330494 DEPDC1Q5TB30 811 aa10.4□□□□□ -0.75
CHD3-201ENST00000330494 PPP1R10Q96QC0 940 aaKnown RBP10.4□□□□□ -0.75
CHD3-201ENST00000330494 FRMD8Q9BZ67 464 aaPredicted RBP10.4□□□□□ -0.75
CHD3-201ENST00000330494 SH3BP4Q9P0V3 963 aa10.4□□□□□ -0.75
CHD3-201ENST00000330494 CYP7B1O75881 506 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 DARSP14868 501 aaKnown RBP10.39□□□□□ -0.75
CHD3-201ENST00000330494 POU1F1P28069 291 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 AXLP30530 894 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 GCNT1Q02742 428 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 MGAT5Q09328 741 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 TCHHL1Q5QJ38 904 aaPredicted RBP10.39□□□□□ -0.75
CHD3-201ENST00000330494 EXOC2Q96KP1 924 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 MARK4Q96L34 752 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 PWWP2AQ96N64 755 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 TM6SF2Q9BZW4 377 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 CDT1Q9H211 546 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 L2HGDHQ9H9P8 463 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 USE1Q9NZ43 259 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 FBXO10Q9UK96 956 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 SIK3Q9Y2K2 1263 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 ZNF541Q9H0D2 1346 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 NDUFB5O43674 189 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 PIRTP0C851 137 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 IMPDH2P12268 514 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 FAAP100Q0VG06 881 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 SLC41A1Q8IVJ1 513 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 NINJ2Q9NZG7 142 aa10.39□□□□□ -0.75
CHD3-201ENST00000330494 DNALI1O14645 258 aaPredicted RBP10.39□□□□□ -0.75
CHD3-201ENST00000330494 PPP1R11O60927 126 aaPredicted RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms