RNA–Protein interactions for RNA: ENST00000308987.5

CKS1B-201, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKS1B, Length 759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-201ENST00000308987 LRRC3Q9BY71 257 aa5.19□□□□□ -1.58
CKS1B-201ENST00000308987 ISCUQ9H1K1 167 aa5.19□□□□□ -1.58
CKS1B-201ENST00000308987 EPN3Q9H201 632 aa5.19□□□□□ -1.58
CKS1B-201ENST00000308987 METTL14Q9HCE5 456 aaKnown RBP5.19□□□□□ -1.58
CKS1B-201ENST00000308987 SLC39A2Q9NP94 309 aa5.19□□□□□ -1.58
CKS1B-201ENST00000308987 FAM207AQ9NSI2 230 aaPredicted RBP5.19□□□□□ -1.58
CKS1B-201ENST00000308987 RBM12Q9NTZ6 932 aaKnown RBP5.19□□□□□ -1.58
CKS1B-201ENST00000308987 TTC7AQ9ULT0 858 aaPredicted RBP5.19□□□□□ -1.58
CKS1B-201ENST00000308987 TRAF3IP3Q9Y228 551 aa5.19□□□□□ -1.58
CKS1B-201ENST00000308987 GINS2Q9Y248 185 aa5.19□□□□□ -1.58
CKS1B-201ENST00000308987 LZTS1Q9Y250 596 aa5.19□□□□□ -1.58
CKS1B-201ENST00000308987 PCDHB7Q9Y5E2 793 aa5.19□□□□□ -1.58
CKS1B-201ENST00000308987 HS3ST3A1Q9Y663 406 aa5.19□□□□□ -1.58
CKS1B-201ENST00000308987 SPEGQ15772 3267 aa5.19□□□□□ -1.58
CKS1B-201ENST00000308987 CEP295Q9C0D2 2601 aa5.19□□□□□ -1.58
CKS1B-201ENST00000308987 SPAG17Q6Q759 2223 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 DENND3A2RUS2 1198 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 GOLGA6L10A6NI86 522 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 MEIS3P2A8K0S8 358 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 PDXKO00764 312 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 CETN3O15182 167 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 EPHB6O15197 1021 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 SLC16A3O15427 465 aaKnown RBP5.18□□□□□ -1.58
CKS1B-201ENST00000308987 MAFGO15525 162 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 MEFVO15553 781 aaPredicted RBP5.18□□□□□ -1.58
CKS1B-201ENST00000308987 HBP1O60381 514 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 CSDE1O75534 798 aaKnown RBP5.18□□□□□ -1.58
CKS1B-201ENST00000308987 KIAA0754O94854 1291 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 ERLIN2O94905 339 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 HEXIM1O94992 359 aaKnown RBP5.18□□□□□ -1.58
CKS1B-201ENST00000308987 EPCAMP16422 314 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 FGFR4P22455 802 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 PMLP29590 882 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 SREBF1P36956 1147 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 CCT5P48643 541 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 CLCN3P51790 818 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 CRYBB1P53674 252 aaPredicted RBP5.18□□□□□ -1.58
CKS1B-201ENST00000308987 KLHL30Q0D2K2 578 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 KLF10Q13118 480 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 RPS6KA1Q15418 735 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 ASIC2Q16515 512 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 NFIL3Q16649 462 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 CEP55Q53EZ4 464 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 TDRD12Q587J7 1177 aaKnown RBP5.18□□□□□ -1.58
CKS1B-201ENST00000308987 TTMPQ5BVD1 217 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 SPOUT1Q5T280 376 aaKnown RBP5.18□□□□□ -1.58
CKS1B-201ENST00000308987 SLFN11Q7Z7L1 901 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 VPS36Q86VN1 386 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 ECHDC2Q86YB7 292 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 SYCE1Q8N0S2 351 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 CNPY4Q8N129 248 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 LGI4Q8N135 537 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 SLC39A11Q8N1S5 342 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 NME8Q8N427 588 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 RASGEF1CQ8N431 466 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 MRPL43Q8N983 215 aaKnown RBP5.18□□□□□ -1.58
CKS1B-201ENST00000308987 USP33Q8TEY7 942 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 SLC22A17Q8WUG5 538 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 HDAC7Q8WUI4 952 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 RIN2Q8WYP3 895 aaPredicted RBP5.18□□□□□ -1.58
CKS1B-201ENST00000308987 SEC14L1Q92503 715 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 ZIM3Q96PE6 472 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 CDCA3Q99618 268 aaPredicted RBP5.18□□□□□ -1.58
CKS1B-201ENST00000308987 TCF25Q9BQ70 676 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 ANO3Q9BYT9 981 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 TMEM117Q9H0C3 514 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 GANQ9H2C0 597 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 KCTD10Q9H3F6 313 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 NOL6Q9H6R4 1146 aaKnown RBP5.18□□□□□ -1.58
CKS1B-201ENST00000308987 ACTR5Q9H9F9 607 aaPredicted RBP5.18□□□□□ -1.58
CKS1B-201ENST00000308987 ATP6V0A4Q9HBG4 840 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 FAM114A2Q9NRY5 505 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 PANK4Q9NVE7 773 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 TMEM161AQ9NX61 479 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 SUCLA2Q9P2R7 463 aaPredicted RBP5.18□□□□□ -1.58
CKS1B-201ENST00000308987 SUCOQ9UBS9 1254 aaKnown RBP5.18□□□□□ -1.58
CKS1B-201ENST00000308987 NENFQ9UMX5 172 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 TFR2Q9UP52 801 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 SORCS3Q9UPU3 1222 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.18□□□□□ -1.58
CKS1B-201ENST00000308987 NBEAQ8NFP9 2946 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 LAMA5O15230 3695 aa5.18□□□□□ -1.58
CKS1B-201ENST00000308987 COL1A2P08123 1366 aa5.17□□□□□ -1.58
CKS1B-201ENST00000308987 ATG2BQ96BY7 2078 aa5.17□□□□□ -1.58
CKS1B-201ENST00000308987 ZNF233A6NK53 670 aa5.17□□□□□ -1.58
CKS1B-201ENST00000308987 M0QZ92 97 aa5.17□□□□□ -1.58
CKS1B-201ENST00000308987 PGRMC1O00264 195 aaKnown RBP5.17□□□□□ -1.58
CKS1B-201ENST00000308987 NDUFAB1O14561 156 aa5.17□□□□□ -1.58
CKS1B-201ENST00000308987 PALMO75781 387 aa5.17□□□□□ -1.58
CKS1B-201ENST00000308987 STBD1O95210 358 aa5.17□□□□□ -1.58
CKS1B-201ENST00000308987 FAM107AO95990 144 aa5.17□□□□□ -1.58
CKS1B-201ENST00000308987 PAEPP09466 180 aa5.17□□□□□ -1.58
CKS1B-201ENST00000308987 FERP16591 822 aa5.17□□□□□ -1.58
CKS1B-201ENST00000308987 HOXB8P17481 243 aaPredicted RBP5.17□□□□□ -1.58
CKS1B-201ENST00000308987 LAG3P18627 525 aa5.17□□□□□ -1.58
CKS1B-201ENST00000308987 NR1D1P20393 614 aa5.17□□□□□ -1.58
CKS1B-201ENST00000308987 MUTP22033 750 aa5.17□□□□□ -1.58
CKS1B-201ENST00000308987 L1CAMP32004 1257 aa5.17□□□□□ -1.58
CKS1B-201ENST00000308987 LSP1P33241 339 aa5.17□□□□□ -1.58
CKS1B-201ENST00000308987 MDH1P40925 334 aaKnown RBP5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms