RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 PPM1EQ8WY54 764 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 SGSM3Q96HU1 749 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 MAGEB18Q96M61 343 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 MPP6Q9NZW5 540 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 PHTF1Q9UMS5 762 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 PTCH2Q9Y6C5 1203 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 C5orf60A6NFR6 353 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 CCT8L1PA6NM43 557 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 NEBLO76041 1014 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 CSH1P0DML2 217 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 CSH2P0DML3 217 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 DSC3Q14574 896 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 ARHGAP36Q6ZRI8 547 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 DEFB128Q7Z7B8 93 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 SPATS2Q86XZ4 545 aaKnown RBP11.81□□□□□ -0.52
CUX1-202ENST00000292538 URGCPQ8TCY9 931 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 STAMBPL1Q96FJ0 436 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 SCLYQ96I15 445 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 SEPT5Q99719 369 aaPredicted RBP11.81□□□□□ -0.52
CUX1-202ENST00000292538 EPAS1Q99814 870 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 HMX1Q9NP08 348 aaPredicted RBP11.81□□□□□ -0.52
CUX1-202ENST00000292538 PCMTD2Q9NV79 361 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 TBC1D13Q9NVG8 400 aa11.81□□□□□ -0.52
CUX1-202ENST00000292538 A0A1W2PQH9 124 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 C2CD2LO14523 706 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 KIF3CO14782 793 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 ZBTB24O43167 697 aaPredicted RBP11.8□□□□□ -0.52
CUX1-202ENST00000292538 DGKIO75912 1065 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 CSPG5O95196 566 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 ASMTLO95671 621 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 APOEP02649 317 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 ERVK-10P10266 1014 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 CPB1P15086 417 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 SAT1P21673 171 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 GMPRP36959 345 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 SCNN1AP37088 669 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 C6orf89Q6UWU4 347 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 TRPM8Q7Z2W7 1104 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 TFAP2DQ7Z6R9 452 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 PIGWQ7Z7B1 504 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 CASP10Q92851 521 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 NT5C3BQ969T7 300 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 MECRQ9BV79 373 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 NPHS2Q9NP85 383 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 KLHL14Q9P2G3 628 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 SMG5Q9UPR3 1016 aaKnown RBP11.8□□□□□ -0.52
CUX1-202ENST00000292538 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.8□□□□□ -0.52
CUX1-202ENST00000292538 COPEO14579 308 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 WASHC5Q12768 1159 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 XRCC4Q13426 336 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 CTXN3Q4LDR2 81 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 FAM117BQ6P1L5 589 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 ZNF534Q76KX8 674 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 ARCQ7LC44 396 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 SLC26A11Q86WA9 606 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 TDRPQ86YL5 185 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 SLC44A1Q8WWI5 657 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 RMDN2Q96LZ7 410 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 EBNA1BP2Q99848 306 aaKnown RBP11.8□□□□□ -0.52
CUX1-202ENST00000292538 PPP1R12CQ9BZL4 782 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 ATXN3LQ9H3M9 355 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 HAUS2Q9NVX0 235 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 SYBUQ9NX95 663 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 SMAPO00193 183 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 DPYSQ14117 519 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 MGAT5BQ3V5L5 792 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 FAM171BQ6P995 826 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 PDZD4Q76G19 769 aaPredicted RBP11.8□□□□□ -0.52
CUX1-202ENST00000292538 OTOP3Q7RTS5 596 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 LINC01599Q8WXQ3 324 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 RTP4Q96DX8 246 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 SIGLEC10Q96LC7 697 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 OLFM3Q96PB7 478 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 NMUR1Q9HB89 426 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 TXNDC16Q9P2K2 825 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 LRFN2Q9ULH4 789 aa11.8□□□□□ -0.52
CUX1-202ENST00000292538 SDR42E2A6NKP2 422 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 DCLK1O15075 740 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 TYROBPO43914 113 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 KRT37O76014 449 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 UBOX5O94941 541 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 KITP10721 976 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 SCTRP47872 440 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 ZBTB17Q13105 803 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 TRIM71Q2Q1W2 868 aaKnown RBP11.79□□□□□ -0.52
CUX1-202ENST00000292538 RAB41Q5JT25 222 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 CDHR3Q6ZTQ4 885 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 KIF2BQ8N4N8 673 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 ARMC2Q8NEN0 867 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 ZNF75CPQ92670 426 aaPredicted RBP11.79□□□□□ -0.52
CUX1-202ENST00000292538 SUSD3Q96L08 255 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 FCRL2Q96LA5 508 aaPredicted RBP11.79□□□□□ -0.52
CUX1-202ENST00000292538 PLAC1Q9HBJ0 212 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 DSEQ9UL01 958 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 PCDHB7Q9Y5E2 793 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 ACTL7BQ9Y614 415 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 RPS6KL1Q9Y6S9 549 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 A0A0G2JND7 137 aa11.79□□□□□ -0.52
CUX1-202ENST00000292538 SRRM3A6NNA2 597 aaPredicted RBP11.79□□□□□ -0.52
CUX1-202ENST00000292538 C9IYK1 514 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms