RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 MTBPQ96DY7 904 aa18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 SLC2A13Q96QE2 648 aa18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 SYT15Q9BQS2 421 aa18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 ARMCX1Q9P291 453 aa18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 ST3GAL5Q9UNP4 418 aa18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 CDY2AQ9Y6F7 541 aa18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 OPHN1O60890 802 aa18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 ERCC2P18074 760 aa18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 CCND1P24385 295 aa18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 ADRA1BP35368 520 aa18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 GMPRP36959 345 aa18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 DPYSQ14117 519 aa18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 PDK1Q15118 436 aa18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 TAF1CQ15572 869 aaPredicted RBP18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 PAN2Q504Q3 1202 aaKnown RBP18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 BNIPLQ7Z465 357 aa18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 ARID3BQ8IVW6 561 aaPredicted RBP18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 ZMIZ2Q8NF64 920 aa18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 SKA1Q96BD8 255 aa18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 MIPEPQ99797 713 aa18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 TACO1Q9BSH4 297 aaKnown RBP18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 MTO1Q9Y2Z2 717 aaKnown RBP18.88■□□□□ 0.61
SHKBP1-201ENST00000291842 E2F8A0AVK6 867 aa18.87■□□□□ 0.61
SHKBP1-201ENST00000291842 TGDSO95455 350 aa18.87■□□□□ 0.61
SHKBP1-201ENST00000291842 GLUD2P49448 558 aa18.87■□□□□ 0.61
SHKBP1-201ENST00000291842 RASSF2P50749 326 aa18.87■□□□□ 0.61
SHKBP1-201ENST00000291842 FKBP1BP68106 108 aa18.87■□□□□ 0.61
SHKBP1-201ENST00000291842 IFRD2Q12894 506 aaPredicted RBP18.87■□□□□ 0.61
SHKBP1-201ENST00000291842 CRYMQ14894 314 aa18.87■□□□□ 0.61
SHKBP1-201ENST00000291842 DSTYKQ6XUX3 929 aa18.87■□□□□ 0.61
SHKBP1-201ENST00000291842 FAM35AQ86V20 835 aa18.87■□□□□ 0.61
SHKBP1-201ENST00000291842 STKLD1Q8NE28 680 aa18.87■□□□□ 0.61
SHKBP1-201ENST00000291842 NKX1-2Q9UD57 310 aaPredicted RBP18.87■□□□□ 0.61
SHKBP1-201ENST00000291842 MCM8Q9UJA3 840 aa18.87■□□□□ 0.61
SHKBP1-201ENST00000291842 DCLK1O15075 740 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 ERVK-10P10266 1014 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 GM2AP17900 193 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 PTPN4P29074 926 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 DAOAP59103 153 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 PSTKQ8IV42 348 aaKnown RBP18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 KATNAL1Q9BW62 490 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 WDR6Q9NNW5 1121 aaKnown RBP18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 FAM105AQ9NUU6 356 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 DDIT4Q9NX09 232 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 KLHL8Q9P2G9 620 aaPredicted RBP18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 TPP1O14773 563 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 KLF11O14901 512 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 PPP1R12AO14974 1030 aaPredicted RBP18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 ALDOAP04075 364 aaKnown RBP18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 GNAT1P11488 350 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 CRHR1P34998 444 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 MAP2K2P36507 400 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 SERPINB9P50453 376 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 SCNN1GP51170 649 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 HSF5Q4G112 596 aaPredicted RBP18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 STEAP4Q687X5 459 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 CXCL17Q6UXB2 119 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 PACS1Q6VY07 963 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 HACE1Q8IYU2 909 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 NPWQ8N729 165 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 OR52K1Q8NGK4 314 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 KCNV2Q8TDN2 545 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 NMUR2Q9GZQ4 415 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 EBF2Q9HAK2 575 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 XPNPEP3Q9NQH7 507 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 SAR1AQ9NR31 198 aa18.86■□□□□ 0.61
SHKBP1-201ENST00000291842 DIAPH2O60879 1101 aa18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 ALDH1A2O94788 518 aa18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 THP07101 528 aa18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 MLNP12872 115 aa18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 TPI1P60174 286 aa18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 MRPS6P82932 125 aaKnown RBP18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 NIPAL4Q0D2K0 466 aa18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 PAFAH1B3Q15102 231 aaKnown RBP18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 NSMCE1Q8WV22 266 aa18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 TSPAN18Q96SJ8 248 aa18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 SIRPGQ9P1W8 387 aa18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 PGAM1P18669 254 aa18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 HUNKP57058 714 aa18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 TEX44Q53QW1 395 aa18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 GNASQ5JWF2 1037 aa18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 CST9Q5W186 159 aa18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 ATG16L1Q676U5 607 aa18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 PTCD3Q96EY7 689 aaKnown RBP18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 ATXN7L3BQ96GX2 97 aa18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 FERMT1Q9BQL6 677 aa18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 NOP53Q9NZM5 478 aaKnown RBP18.85■□□□□ 0.61
SHKBP1-201ENST00000291842 ARL5CA6NH57 179 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 M0QZ92 97 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 FCHO1O14526 889 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 ENTPD5O75356 428 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 BPGMP07738 259 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 PPM1JQ5JR12 505 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 RFWD3Q6PCD5 774 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 MARK2Q7KZI7 788 aaKnown RBP18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 TTC8Q8TAM2 541 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 HASPINQ8TF76 798 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 NSL1Q96IY1 281 aa18.84■□□□□ 0.61
SHKBP1-201ENST00000291842 GORASP1Q9BQQ3 440 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms