RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 INTS13Q9NVM9 706 aa8.15□□□□□ -1.1
LIMD1-201ENST00000273317 FER1L4A9Z1Z3 1794 aa8.15□□□□□ -1.1
LIMD1-201ENST00000273317 DDHD2O94830 711 aa8.15□□□□□ -1.1
LIMD1-201ENST00000273317 PPIDQ08752 370 aaKnown RBP8.15□□□□□ -1.1
LIMD1-201ENST00000273317 KCNMB4Q86W47 210 aa8.15□□□□□ -1.1
LIMD1-201ENST00000273317 ZNF34Q8IZ26 560 aa8.15□□□□□ -1.1
LIMD1-201ENST00000273317 PGM2Q96G03 612 aa8.15□□□□□ -1.1
LIMD1-201ENST00000273317 ADI1Q9BV57 179 aa8.15□□□□□ -1.1
LIMD1-201ENST00000273317 NCF1BA6NI72 391 aaPredicted RBP8.15□□□□□ -1.11
LIMD1-201ENST00000273317 NCF1CA8MVU1 366 aaPredicted RBP8.15□□□□□ -1.11
LIMD1-201ENST00000273317 GPR182O15218 404 aa8.15□□□□□ -1.11
LIMD1-201ENST00000273317 NCF1P14598 390 aaPredicted RBP8.15□□□□□ -1.11
LIMD1-201ENST00000273317 ATP1A4Q13733 1029 aa8.15□□□□□ -1.11
LIMD1-201ENST00000273317 TTC27Q6P3X3 843 aa8.15□□□□□ -1.11
LIMD1-201ENST00000273317 ACTL7BQ9Y614 415 aa8.15□□□□□ -1.11
LIMD1-201ENST00000273317 FOXN3O00409 490 aaPredicted RBP8.15□□□□□ -1.11
LIMD1-201ENST00000273317 SMNDC1O75940 238 aaKnown RBP eCLIP8.15□□□□□ -1.11
LIMD1-201ENST00000273317 ABRAQ8N0Z2 381 aa8.15□□□□□ -1.11
LIMD1-201ENST00000273317 SGPL1O95470 568 aa8.15□□□□□ -1.11
LIMD1-201ENST00000273317 POU1F1P28069 291 aa8.15□□□□□ -1.11
LIMD1-201ENST00000273317 ALDH7A1P49419 539 aaKnown RBP8.15□□□□□ -1.11
LIMD1-201ENST00000273317 ZNF844Q08AG5 666 aa8.15□□□□□ -1.11
LIMD1-201ENST00000273317 PTPAQ15257 358 aa8.15□□□□□ -1.11
LIMD1-201ENST00000273317 RIPOR1Q6ZS17 1223 aa8.15□□□□□ -1.11
LIMD1-201ENST00000273317 FBXO39Q8N4B4 442 aa8.15□□□□□ -1.11
LIMD1-201ENST00000273317 UTP15Q8TED0 518 aaKnown RBP8.15□□□□□ -1.11
LIMD1-201ENST00000273317 FHDC1Q9C0D6 1143 aaPredicted RBP8.15□□□□□ -1.11
LIMD1-201ENST00000273317 EPB41L4BQ9H329 900 aa8.15□□□□□ -1.11
LIMD1-201ENST00000273317 FBXO44Q9H4M3 255 aa8.15□□□□□ -1.11
LIMD1-201ENST00000273317 RP1P56715 2156 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 CHADO15335 359 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 SPIRE1Q08AE8 756 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 PPIL2Q13356 520 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 BROXQ5VW32 411 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 FAM220AQ7Z4H9 259 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 AHI1Q8N157 1196 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 MCRS1Q96EZ8 462 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 ZNF668Q96K58 619 aaPredicted RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 DPY30Q9C005 99 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 MYLK2Q9H1R3 596 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 ANKZF1Q9H8Y5 726 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 KCND1Q9NSA2 647 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 ZNF70Q9UC06 446 aaPredicted RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 GP5P40197 560 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 XIAPP98170 497 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 CDC42EP5Q6NZY7 148 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 NEK5Q6P3R8 708 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 CAMK1DQ8IU85 385 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 PHACTR4Q8IZ21 702 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 SHCBP1LQ9BZQ2 653 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 ELP3Q9H9T3 547 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 GDF3Q9NR23 364 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 L1RE1Q9UN81 338 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 NBPF26B4DH59 902 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 GUCY1B2O75343 617 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 NPR3P17342 541 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 SMIM11AP58511 58 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 PKN1Q16512 942 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 NBPF15Q8N660 670 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 ZNF398Q8TD17 642 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 FAM151AQ8WW52 585 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 VAT1Q99536 393 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 SYNDIG1Q9H7V2 258 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 NT5MQ9NPB1 228 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 PCDHA3Q9Y5H8 950 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 IFRD1O00458 451 aaPredicted RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 HS6ST1O60243 411 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 SYNCRIPO60506 623 aaKnown RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 SNAP91O60641 907 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 EPN2O95208 641 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 ELAVL2Q12926 359 aaKnown RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 VPS72Q15906 364 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 INO80DQ53TQ3 878 aaPredicted RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 RPRD1AQ96P16 312 aaPredicted RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 TARS2Q9BW92 718 aaKnown RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 REXO4Q9GZR2 422 aaKnown RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 ZFYVE28Q9HCC9 887 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 DNAJC5BQ9UF47 199 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 TRIM43BA6NCK2 446 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 KPNA6O60684 536 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 RPL3P39023 403 aaKnown RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 ACLYP53396 1101 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 GRB10Q13322 594 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 DDX39BQ13838 428 aaKnown RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 FAM187BQ17R55 369 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 MTSS1LQ765P7 747 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 C8orf59Q8N0T1 100 aaPredicted RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 PGBD3Q8N328 593 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 ITFG1Q8TB96 612 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 ATG4AQ8WYN0 398 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 CYLDQ9NQC7 956 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 KIF1AQ12756 1690 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 GPR75-ASB3A0A0A6YYF3 556 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 IRGMA1A4Y4 181 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 ETS1P14921 441 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 GLRBP48167 497 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 CRELD2Q6UXH1 353 aaPredicted RBP8.14□□□□□ -1.11
LIMD1-201ENST00000273317 ARHGEF19Q8IW93 802 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 BSNDQ8WZ55 320 aa8.14□□□□□ -1.11
LIMD1-201ENST00000273317 QRFPRQ96P65 431 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms