RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 KCNK9Q9NPC2 374 aa17.12■□□□□ 0.33
CCDC40-201ENST00000269318 EIF2B3Q9NR50 452 aaKnown RBP17.12■□□□□ 0.33
CCDC40-201ENST00000269318 OSER1Q9NX31 292 aa17.12■□□□□ 0.33
CCDC40-201ENST00000269318 SENP1Q9P0U3 644 aa17.12■□□□□ 0.33
CCDC40-201ENST00000269318 PCDHB5Q9Y5E4 795 aa17.12■□□□□ 0.33
CCDC40-201ENST00000269318 PLXNA3P51805 1871 aa17.12■□□□□ 0.33
CCDC40-201ENST00000269318 A0A1W2PQH9 124 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 EBAG9O00559 213 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 HOXA2O43364 376 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 ZNF189O75820 626 aaPredicted RBP17.11■□□□□ 0.33
CCDC40-201ENST00000269318 EPHB2P29323 1055 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 GRIA1P42261 906 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 CDK16Q00536 496 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 GALNT2Q10471 571 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 LRRC14Q15048 493 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 ZNF280DQ6N043 979 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 ANKRD33Q7Z3H0 272 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 TTC9BQ8N6N2 239 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 ZNF784Q8NCA9 323 aaPredicted RBP17.11■□□□□ 0.33
CCDC40-201ENST00000269318 STKLD1Q8NE28 680 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 MZB1Q8WU39 189 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 RNF34Q969K3 372 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 MRRFQ96E11 262 aaKnown RBP17.11■□□□□ 0.33
CCDC40-201ENST00000269318 PGLYRP2Q96PD5 576 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 HAPLN3Q96S86 360 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 FERMT1Q9BQL6 677 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 CEP41Q9BYV8 373 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 XAB2Q9HCS7 855 aaKnown RBP17.11■□□□□ 0.33
CCDC40-201ENST00000269318 IL37Q9NZH6 218 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 SFMBT1Q9UHJ3 866 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 TTLL3Q9Y4R7 772 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 SCN5AQ14524 2016 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 TBC1D4O60343 1298 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 GALTP07902 379 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 CCL5P13501 91 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 KRT15P19012 456 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 PARP6Q2NL67 630 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 FUT10Q6P4F1 479 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 ATAD1Q8NBU5 361 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 HDAC11Q96DB2 347 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 TMEM175Q9BSA9 504 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 MRPL9Q9BYD2 267 aaKnown RBP17.11■□□□□ 0.33
CCDC40-201ENST00000269318 BRD8Q9H0E9 1235 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 TRABDQ9H4I3 376 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 KIF9Q9HAQ2 790 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 IGSF9Q9P2J2 1179 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 ZC3H7BQ9UGR2 993 aaKnown RBP17.11■□□□□ 0.33
CCDC40-201ENST00000269318 MYO16Q9Y6X6 1858 aa17.11■□□□□ 0.33
CCDC40-201ENST00000269318 PRPF4O43172 522 aaKnown RBP eCLIP17.1■□□□□ 0.33
CCDC40-201ENST00000269318 MSI1O43347 362 aaKnown RBP17.1■□□□□ 0.33
CCDC40-201ENST00000269318 MLNP12872 115 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 PTPN3P26045 913 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 HOXC13P31276 330 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 SERPINB6P35237 376 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 MSH2P43246 934 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 IFNAR2P48551 515 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 SLC18A1P54219 525 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 USP46P62068 366 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 PPP2R5DQ14738 602 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 KBTBD12Q3ZCT8 623 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 MANEALQ5VSG8 457 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 RSPO2Q6UXX9 243 aaPredicted RBP17.1■□□□□ 0.33
CCDC40-201ENST00000269318 MON1AQ86VX9 555 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 TMEM173Q86WV6 379 aaPredicted RBP17.1■□□□□ 0.33
CCDC40-201ENST00000269318 MPP5Q8N3R9 675 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 ANKRD42Q8N9B4 389 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 MGARPQ8TDB4 240 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 DPF3Q92784 378 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 CFAP36Q96G28 342 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 RNF208Q9H0X6 261 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 HIPK3Q9H422 1215 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 FBXO44Q9H4M3 255 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 SEPT10Q9P0V9 454 aa17.1■□□□□ 0.33
CCDC40-201ENST00000269318 A0A1W2PPM1 405 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 FAM92AA1XBS5 289 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 FAM47DPA6NHR8 397 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 KCNU1A8MYU2 1149 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 KCNK1O00180 336 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 VNN2O95498 520 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 MX2P20592 715 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 PSMB4P28070 264 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 CCR1P32246 355 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 STX2P32856 288 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 MNX1P50219 401 aaPredicted RBP17.09■□□□□ 0.33
CCDC40-201ENST00000269318 ATN1P54259 1190 aaPredicted RBP17.09■□□□□ 0.33
CCDC40-201ENST00000269318 CCL23P55773 120 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 FAAP100Q0VG06 881 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 RTP2Q5QGT7 225 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 MSANTD2Q6P1R3 559 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 PRPF39Q86UA1 669 aaKnown RBP17.09■□□□□ 0.33
CCDC40-201ENST00000269318 PDCD7Q8N8D1 485 aaKnown RBP17.09■□□□□ 0.33
CCDC40-201ENST00000269318 SLC44A1Q8WWI5 657 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 EBNA1BP2Q99848 306 aaKnown RBP17.09■□□□□ 0.33
CCDC40-201ENST00000269318 ZMYND15Q9H091 742 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 TBKBP1A7MCY6 615 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 F5H423 210 aaPredicted RBP17.09■□□□□ 0.33
CCDC40-201ENST00000269318 PAGE1O75459 146 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 GSTA2P09210 222 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 PRKCHP24723 683 aa17.09■□□□□ 0.33
CCDC40-201ENST00000269318 GARSP41250 739 aaKnown RBP17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 128.2 ms