RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 CLEC4CQ8WTT0 213 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 UPF1Q92900 1129 aaKnown RBP eCLIP16.74■□□□□ 0.27
CTCF-201ENST00000264010 HNRNPABQ99729 332 aaKnown RBP16.74■□□□□ 0.27
CTCF-201ENST00000264010 MYLK2Q9H1R3 596 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 HAO1Q9UJM8 370 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 RPS6KL1Q9Y6S9 549 aa16.74■□□□□ 0.27
CTCF-201ENST00000264010 AP3B1O00203 1094 aa16.73■□□□□ 0.27
CTCF-201ENST00000264010 COL11A1P12107 1806 aaPredicted RBP16.73■□□□□ 0.27
CTCF-201ENST00000264010 HOXA11P31270 313 aaPredicted RBP16.73■□□□□ 0.27
CTCF-201ENST00000264010 HSP90AA5PQ58FG0 334 aa16.73■□□□□ 0.27
CTCF-201ENST00000264010 CCDC22O60826 627 aa16.73■□□□□ 0.27
CTCF-201ENST00000264010 TPSB2P20231 275 aa16.73■□□□□ 0.27
CTCF-201ENST00000264010 L1CAMP32004 1257 aa16.73■□□□□ 0.27
CTCF-201ENST00000264010 MLH1P40692 756 aa16.73■□□□□ 0.27
CTCF-201ENST00000264010 ITKQ08881 620 aa16.73■□□□□ 0.27
CTCF-201ENST00000264010 TPSAB1Q15661 275 aa16.73■□□□□ 0.27
CTCF-201ENST00000264010 SPRED3Q2MJR0 410 aa16.73■□□□□ 0.27
CTCF-201ENST00000264010 SPATA2LQ8IUW3 424 aaPredicted RBP16.73■□□□□ 0.27
CTCF-201ENST00000264010 PSTKQ8IV42 348 aaKnown RBP16.73■□□□□ 0.27
CTCF-201ENST00000264010 ZNF669Q96BR6 464 aaPredicted RBP16.73■□□□□ 0.27
CTCF-201ENST00000264010 QKIQ96PU8 341 aaKnown RBP eCLIP16.73■□□□□ 0.27
CTCF-201ENST00000264010 APBA2Q99767 749 aa16.73■□□□□ 0.27
CTCF-201ENST00000264010 CEP41Q9BYV8 373 aa16.73■□□□□ 0.27
CTCF-201ENST00000264010 MMADHCQ9H3L0 296 aaPredicted RBP16.73■□□□□ 0.27
CTCF-201ENST00000264010 FAM96AQ9H5X1 160 aa16.73■□□□□ 0.27
CTCF-201ENST00000264010 PSMD3O43242 534 aa16.73■□□□□ 0.27
CTCF-201ENST00000264010 GCATO75600 419 aa16.73■□□□□ 0.27
CTCF-201ENST00000264010 ATP6V1B1P15313 513 aa16.73■□□□□ 0.27
CTCF-201ENST00000264010 PARP6Q2NL67 630 aa16.73■□□□□ 0.27
CTCF-201ENST00000264010 MTDHQ86UE4 582 aaKnown RBP16.73■□□□□ 0.27
CTCF-201ENST00000264010 ADAM32Q8TC27 787 aa16.73■□□□□ 0.27
CTCF-201ENST00000264010 GDAP2Q9NXN4 497 aa16.73■□□□□ 0.27
CTCF-201ENST00000264010 WDR27A2RRH5 827 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 KCNE1P15382 129 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 WARSP23381 471 aaKnown RBP16.72■□□□□ 0.27
CTCF-201ENST00000264010 NCALDP61601 193 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 MOGSQ13724 837 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 KCNJ11Q14654 390 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 MAPRE1Q15691 268 aaKnown RBP16.72■□□□□ 0.27
CTCF-201ENST00000264010 SPOCK2Q92563 424 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 CCDC124Q96CT7 223 aaKnown RBP16.72■□□□□ 0.27
CTCF-201ENST00000264010 SMARCD1Q96GM5 515 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 LGMNQ99538 433 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 RNF39Q9H2S5 420 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 DOCK5Q9H7D0 1870 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 LTFP02788 710 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 SPRP35270 261 aaPredicted RBP16.72■□□□□ 0.27
CTCF-201ENST00000264010 SLC9A4Q6AI14 798 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 CCDC185Q8N715 623 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 LINC01465Q8N7H1 131 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 ZNF398Q8TD17 642 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 LRRC40Q9H9A6 602 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 DDX18Q9NVP1 670 aaKnown RBP16.72■□□□□ 0.27
CTCF-201ENST00000264010 SLC17A7Q9P2U7 560 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 ST3GAL5Q9UNP4 418 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 E7ESA3 106 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 DFFAO00273 331 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 MGAT1P26572 445 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 ATXN1P54253 815 aaKnown RBP16.72■□□□□ 0.27
CTCF-201ENST00000264010 TAF1BQ53T94 588 aaPredicted RBP16.72■□□□□ 0.27
CTCF-201ENST00000264010 MARCH8Q5T0T0 291 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 OTOAQ7RTW8 1153 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 USP6NLQ92738 828 aa16.72■□□□□ 0.27
CTCF-201ENST00000264010 ABT1Q9ULW3 272 aaKnown RBP16.72■□□□□ 0.27
CTCF-201ENST00000264010 GRIK1P39086 918 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 MGAT5Q09328 741 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 BNIP1Q12981 228 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 THOC5Q13769 683 aaKnown RBP16.71■□□□□ 0.27
CTCF-201ENST00000264010 ECHDC2Q86YB7 292 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 ARID3BQ8IVW6 561 aaPredicted RBP16.71■□□□□ 0.27
CTCF-201ENST00000264010 ABI1Q8IZP0 508 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 PQLC3Q8N755 202 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 ZFP42Q96MM3 310 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 FAM161BQ96MY7 647 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 DDX50Q9BQ39 737 aaKnown RBP16.71■□□□□ 0.27
CTCF-201ENST00000264010 PRDM12Q9H4Q4 367 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 PALMDQ9NP74 551 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 FAM105AQ9NUU6 356 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 KCNK1O00180 336 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 PIRO00625 290 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 GLRA3O75311 464 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 GPR32O75388 356 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 PGAM1P18669 254 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 PAN2Q504Q3 1202 aaKnown RBP16.71■□□□□ 0.27
CTCF-201ENST00000264010 CXCL17Q6UXB2 119 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 FITM2Q8N6M3 262 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 NDRG1Q92597 394 aaKnown RBP16.71■□□□□ 0.27
CTCF-201ENST00000264010 EDEM1Q92611 657 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 NSL1Q96IY1 281 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 BRD8Q9H0E9 1235 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 DSEQ9UL01 958 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 CDH9Q9ULB4 789 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 APOBEC2Q9Y235 224 aaKnown RBP16.71■□□□□ 0.27
CTCF-201ENST00000264010 PCDHA11Q9Y5I1 949 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 UNC5CO95185 931 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 LMNAP02545 664 aaKnown RBP16.71■□□□□ 0.27
CTCF-201ENST00000264010 USP17L7P0C7H9 530 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 TAZQ16635 292 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 UNC5AQ6ZN44 842 aa16.71■□□□□ 0.27
CTCF-201ENST00000264010 DCAKDQ8WVC6 231 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms