RNA–Protein interactions for RNA: ENST00000263694.8

SNRNP40-201, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP40, Length 1,597 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-201ENST00000263694 COPS2P61201 443 aa10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 SLC7A9P82251 487 aa10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 RING1Q06587 406 aa10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 KLF1Q13351 362 aaPredicted RBP10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 SNX1Q13596 522 aa10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 AUHQ13825 339 aaKnown RBP10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 RWDD4Q6NW29 188 aaKnown RBP10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 C1orf228Q6PIY5 440 aa10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 RFX8Q6ZV50 586 aa10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 GET4Q7L5D6 327 aaPredicted RBP10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 CIR1Q86X95 450 aaPredicted RBP10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 MAP7D3Q8IWC1 876 aa10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 TP53INP2Q8IXH6 220 aa10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 ATP6V0D2Q8N8Y2 350 aa10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 LEMD2Q8NC56 503 aa10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 UBE2Q2Q8WVN8 375 aa10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 C1orf54Q8WWF1 131 aa10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 ATG4AQ8WYN0 398 aa10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 USP13Q92995 863 aaPredicted RBP10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 PLD4Q96BZ4 506 aa10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 BTN2A3PQ96KV6 586 aa10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 HAPLN3Q96S86 360 aa10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 CDX2Q99626 313 aaPredicted RBP10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 MAK16Q9BXY0 300 aaKnown RBP10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 OSBPL2Q9H1P3 480 aa10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 RBM12Q9NTZ6 932 aaKnown RBP10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 MPP6Q9NZW5 540 aa10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 AGO1Q9UL18 857 aaKnown RBP10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 VANGL2Q9ULK5 521 aa10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 TTC7AQ9ULT0 858 aaPredicted RBP10.06□□□□□ -0.8
SNRNP40-201ENST00000263694 E9PAM4 449 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 H3BQ06 376 aaPredicted RBP10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 ZNF197O14709 1029 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 DAPK3O43293 454 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 ACSL4O60488 711 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 PECAM1P16284 738 aaPredicted RBP10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 TACR2P21452 398 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 ARL4AP40617 200 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 CETN2P41208 172 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 HARS2P49590 506 aaKnown RBP10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 SGSHP51688 502 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 KPNA1P52294 538 aaPredicted RBP10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 AIF1P55008 147 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 TPI1P60174 286 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 TUBB2AQ13885 445 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 DPYSQ14117 519 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 PPP2R5EQ16537 467 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 FAM133BQ5BKY9 247 aaKnown RBP10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 NUGGCQ68CJ6 796 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 FBXL22Q6P050 247 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 CHSY1Q86X52 802 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 PSTKQ8IV42 348 aaKnown RBP10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 ARID3BQ8IVW6 561 aaPredicted RBP10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 UNC45BQ8IWX7 931 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 KLHL7Q8IXQ5 586 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 ZNF683Q8IZ20 524 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 LGI2Q8N0V4 545 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 CFAP52Q8N1V2 620 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 PLD5Q8N7P1 536 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 PRELID2Q8N945 189 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 NOA1Q8NC60 698 aaKnown RBP10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 SPATA4Q8NEY3 305 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 SH3RF2Q8TEC5 729 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 FGF13Q92913 245 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 IGSF8Q969P0 613 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 FAF2Q96CS3 445 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 RSPRY1Q96DX4 576 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 LRRC3BQ96PB8 259 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 PRMT1Q99873 361 aaKnown RBP10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 ZNF670Q9BS34 389 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 TUBB2BQ9BVA1 445 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 C10orf88Q9H8K7 445 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 ARHGEF4Q9NR80 690 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 SLC12A6Q9UHW9 1150 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 NEU3Q9UQ49 428 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 V9GYY5 206 aaPredicted RBP10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 CLUHO75153 1309 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 H3BRJ5 948 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 CNTN5O94779 1100 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 HOXB8P17481 243 aaPredicted RBP10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 ERCC2P18074 760 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 SP100P23497 879 aaPredicted RBP10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 DDX6P26196 483 aaKnown RBP eCLIP10.05□□□□□ -0.83e-6■□□□□ 10
SNRNP40-201ENST00000263694 EPHB2P29323 1055 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 PTPN7P35236 360 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 VIPR2P41587 438 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 KCNJ1P48048 391 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 NUMBP49757 651 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 GBE1Q04446 702 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 SLC10A2Q12908 348 aaPredicted RBP10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 ALFQ53S48 1182 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 FAM78AQ5JUQ0 283 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 ATAT1Q5SQI0 421 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 MANEALQ5VSG8 457 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 Q6ZNB5 142 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 BBS12Q6ZW61 710 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 BBS7Q8IWZ6 715 aa10.05□□□□□ -0.8
SNRNP40-201ENST00000263694 NPAS3Q8IXF0 933 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms