RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 NUP62P37198 522 aaPredicted RBP19.57■□□□□ 0.72
UPF1-201ENST00000262803 SKIV2L2P42285 1042 aaKnown RBP19.57■□□□□ 0.72
UPF1-201ENST00000262803 MMRN1Q13201 1228 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 C1DQ13901 141 aaKnown RBP19.57■□□□□ 0.72
UPF1-201ENST00000262803 UBE2E3Q969T4 207 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 SPG21Q9NZD8 308 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 CPA4Q9UI42 421 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 SIK3Q9Y2K2 1263 aa19.57■□□□□ 0.72
UPF1-201ENST00000262803 C15orf38-AP3S2A0A0A6YYH1 394 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 KATNA1O75449 491 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 CPA3P15088 417 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 CXCL9Q07325 125 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 ARPINQ7Z6K5 226 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 ERI2A8K979 691 aaKnown RBP19.56■□□□□ 0.72
UPF1-201ENST00000262803 PCDH8O95206 1070 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 IFNGR2P38484 337 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 GSTA3Q16772 222 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 UNC93AQ86WB7 457 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 KIAA2013Q8IYS2 634 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 NKX2-3Q8TAU0 364 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 MRPS26Q9BYN8 205 aaKnown RBP19.56■□□□□ 0.72
UPF1-201ENST00000262803 RBM22Q9NW64 420 aaKnown RBP eCLIP19.56■□□□□ 0.727e-6■■□□□ 11.6
UPF1-201ENST00000262803 PADI4Q9UM07 663 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 PCNAP12004 261 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 UQCRBP14927 111 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 SERPINB1P30740 379 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 YWHAZP63104 245 aaKnown RBP19.56■□□□□ 0.72
UPF1-201ENST00000262803 TLK2Q86UE8 772 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 ELMO3Q96BJ8 720 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 CEP44Q9C0F1 390 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 TMEM134Q9H6X4 195 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 ATP13A1Q9HD20 1204 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 KCND1Q9NSA2 647 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 SATB2Q9UPW6 733 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 QSOX1O00391 747 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 GHRP10912 638 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 PSEN1P49768 467 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 IFI35P80217 286 aaPredicted RBP19.56■□□□□ 0.72
UPF1-201ENST00000262803 CYP2A13Q16696 494 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 COLGALT1Q8NBJ5 622 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 CPNE1Q99829 537 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 ARHGAP23Q9P227 1491 aa19.56■□□□□ 0.72
UPF1-201ENST00000262803 EML1O00423 815 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 ADCY6O43306 1168 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 ELK3P41970 407 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 CDK7P50613 346 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 C11orf88Q6PI97 169 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 DPP10Q8N608 796 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 FAM120BQ96EK7 910 aaKnown RBP19.55■□□□□ 0.72
UPF1-201ENST00000262803 OSMRQ99650 979 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 MRIQ9BWK5 157 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 PHACTR1Q9C0D0 580 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 TAS2R13Q9NYV9 303 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 KLHL20Q9Y2M5 609 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 SLC16A1P53985 500 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 PAGE2BQ5JRK9 111 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 LRRC49Q8IUZ0 686 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 OR56A4Q8NGH8 313 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 SLC39A8Q9C0K1 460 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 SNCAIPQ9Y6H5 919 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 CNOT3O75175 753 aaKnown RBP19.55■□□□□ 0.72
UPF1-201ENST00000262803 CLTBP09497 229 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 PECAM1P16284 738 aaPredicted RBP19.55■□□□□ 0.72
UPF1-201ENST00000262803 ITGB6P18564 788 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 SLC12A3P55017 1021 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 FAM45BPQ6NSW5 357 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 TSEN2Q8NCE0 465 aaKnown RBP19.55■□□□□ 0.72
UPF1-201ENST00000262803 MTMR9Q96QG7 549 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 CYP4F12Q9HCS2 524 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 FKBP6O75344 327 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 GP5P40197 560 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 CSE1LP55060 971 aaKnown RBP19.55■□□□□ 0.72
UPF1-201ENST00000262803 NFIL3Q16649 462 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 ZCWPW2Q504Y3 356 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 POP5Q969H6 163 aaKnown RBP19.55■□□□□ 0.72
UPF1-201ENST00000262803 DDX4Q9NQI0 724 aaKnown RBP19.55■□□□□ 0.72
UPF1-201ENST00000262803 PCDHGC5Q9Y5F6 944 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 GRK4P32298 578 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 LPCAT1Q8NF37 534 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 NINJ2Q9NZG7 142 aa19.55■□□□□ 0.72
UPF1-201ENST00000262803 E9PBE3 544 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 KPNA5O15131 536 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 KLHL41O60662 606 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 HMGCRP04035 888 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 BMP6P22004 513 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 MSLNQ13421 630 aaPredicted RBP19.54■□□□□ 0.72
UPF1-201ENST00000262803 GALNTL6Q49A17 601 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 CBWD6Q4V339 395 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 CBWD3Q5JTY5 395 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 CBWD5Q5RIA9 395 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 OLFML2BQ68BL8 750 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 MFSD7Q6UXD7 560 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 VGLL2Q8N8G2 317 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 FTHL17Q9BXU8 183 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 OSBPL6Q9BZF3 934 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 CSDE1O75534 798 aaKnown RBP19.54■□□□□ 0.72
UPF1-201ENST00000262803 CYP3A4P08684 503 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 IKBKEQ14164 716 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 LRRC39Q96DD0 335 aa19.54■□□□□ 0.72
UPF1-201ENST00000262803 NEK6Q9HC98 313 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms