RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 EML3Q32P44 896 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 CMC1Q7Z7K0 106 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 C10orf107Q8IVU9 208 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 ARHGAP24Q8N264 748 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 CCDC185Q8N715 623 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 AZIN2Q96A70 460 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 DPEP3Q9H4B8 488 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 HES2Q9Y543 173 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.35□□□□□ -0.75
LIG3-201ENST00000262327 TMEM88BA6NKF7 163 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 SPAG6O75602 509 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 ALDOAP04075 364 aaKnown RBP10.35□□□□□ -0.75
LIG3-201ENST00000262327 ERVK-10P10266 1014 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 GOT1P17174 413 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 MGAT1P26572 445 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 TMEM132DQ14C87 1099 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 CFAP157Q5JU67 520 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 C6orf163Q5TEZ5 329 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 PLEKHH3Q7Z736 793 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 FAM131BQ86XD5 332 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 IFNL1Q8IU54 200 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 CXorf38Q8TB03 319 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 KHSRPQ92945 711 aaKnown RBP eCLIP10.35□□□□□ -0.75
LIG3-201ENST00000262327 AGAP3Q96P47 875 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 EBF3Q9H4W6 596 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 IFT122Q9HBG6 1241 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 DNAAF2Q9NVR5 837 aaKnown RBP10.35□□□□□ -0.75
LIG3-201ENST00000262327 ZNF212Q9UDV6 495 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 EMCNQ9ULC0 261 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 BARX2Q9UMQ3 279 aaPredicted RBP10.35□□□□□ -0.75
LIG3-201ENST00000262327 NME7Q9Y5B8 376 aa10.35□□□□□ -0.75
LIG3-201ENST00000262327 LRRC37A2A6NM11 1700 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 A0A088AWK7 358 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 RBM47A0AV96 593 aaKnown RBP10.34□□□□□ -0.75
LIG3-201ENST00000262327 KLF11O14901 512 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 TPD52L2O43399 206 aaKnown RBP10.34□□□□□ -0.75
LIG3-201ENST00000262327 ATP6V1G1O75348 118 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 TOMM70O94826 608 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 NPTXRO95502 500 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 GSRP00390 522 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 ETS2P15036 469 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 TSHRP16473 764 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 ARF4P18085 180 aaPredicted RBP10.34□□□□□ -0.75
LIG3-201ENST00000262327 MSX2P35548 267 aaPredicted RBP10.34□□□□□ -0.75
LIG3-201ENST00000262327 SLC1A6P48664 564 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 RAP1GDS1P52306 607 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 RABGGTBP53611 331 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 ATXN3P54252 364 aaPredicted RBP10.34□□□□□ -0.75
LIG3-201ENST00000262327 PDE1CQ14123 709 aaPredicted RBP10.34□□□□□ -0.75
LIG3-201ENST00000262327 LBRQ14739 615 aaKnown RBP10.34□□□□□ -0.75
LIG3-201ENST00000262327 MFSD4BQ5TF39 518 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 OLFML1Q6UWY5 402 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 RNF111Q6ZNA4 994 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 MAVSQ7Z434 540 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 GPR142Q7Z601 462 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 SPNS2Q8IVW8 549 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 KIF12Q96FN5 646 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 NT5C1AQ9BXI3 368 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 C2orf40Q9H1Z8 148 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 PNPLA8Q9NP80 782 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 DPP3Q9NY33 737 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 ANGPTL2Q9UKU9 493 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 FAM159BA6NKW6 160 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 SNNO75324 88 aaPredicted RBP10.34□□□□□ -0.75
LIG3-201ENST00000262327 CCDC130P13994 396 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 VAV1P15498 845 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 CRHR1P34998 444 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 ACTR3P61158 418 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 CDC16Q13042 620 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 GRB14Q14449 540 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 PPP2R5DQ14738 602 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 BOLA3Q53S33 107 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 ACBD5Q5T8D3 534 aaPredicted RBP10.34□□□□□ -0.75
LIG3-201ENST00000262327 TEDDM1Q5T9Z0 273 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 PHTF2Q8N3S3 785 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 GATA6Q92908 595 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 SLX1AQ9BQ83 275 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 XPNPEP3Q9NQH7 507 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 PPME1Q9Y570 386 aa10.34□□□□□ -0.75
LIG3-201ENST00000262327 A6NJR5 290 aa10.33□□□□□ -0.76
LIG3-201ENST00000262327 SDR42E2A6NKP2 422 aa10.33□□□□□ -0.76
LIG3-201ENST00000262327 TXNDC9O14530 226 aa10.33□□□□□ -0.76
LIG3-201ENST00000262327 MAGEC1O60732 1142 aa10.33□□□□□ -0.76
LIG3-201ENST00000262327 RNASEH1O60930 286 aaKnown RBP10.33□□□□□ -0.76
LIG3-201ENST00000262327 LYNP07948 512 aa10.33□□□□□ -0.76
LIG3-201ENST00000262327 FGF3P11487 239 aaPredicted RBP10.33□□□□□ -0.76
LIG3-201ENST00000262327 INSRRP14616 1297 aa10.33□□□□□ -0.76
LIG3-201ENST00000262327 CCNFP41002 786 aa10.33□□□□□ -0.76
LIG3-201ENST00000262327 TM4SF4P48230 202 aa10.33□□□□□ -0.76
LIG3-201ENST00000262327 AP2B1P63010 937 aa10.33□□□□□ -0.76
LIG3-201ENST00000262327 PITX1P78337 314 aaPredicted RBP10.33□□□□□ -0.76
LIG3-201ENST00000262327 ITGA9Q13797 1035 aa10.33□□□□□ -0.76
LIG3-201ENST00000262327 HIC1Q14526 733 aa10.33□□□□□ -0.76
LIG3-201ENST00000262327 TAF1CQ15572 869 aaPredicted RBP10.33□□□□□ -0.76
LIG3-201ENST00000262327 ZRSR2Q15696 482 aaKnown RBP10.33□□□□□ -0.76
LIG3-201ENST00000262327 SOWAHAQ2M3V2 549 aa10.33□□□□□ -0.76
LIG3-201ENST00000262327 HEATR6Q6AI08 1181 aaKnown RBP10.33□□□□□ -0.76
LIG3-201ENST00000262327 NET1Q7Z628 596 aaPredicted RBP10.33□□□□□ -0.76
LIG3-201ENST00000262327 HPS6Q86YV9 775 aa10.33□□□□□ -0.76
LIG3-201ENST00000262327 CCNYQ8ND76 341 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms