RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 PACS1Q6VY07 963 aa21.92■■□□□ 1.1
TRIM28-201ENST00000253024 ANKRD13AQ8IZ07 590 aa21.92■■□□□ 1.1
TRIM28-201ENST00000253024 ZNF333Q96JL9 665 aa21.92■■□□□ 1.1
TRIM28-201ENST00000253024 KCNK16Q96T55 309 aa21.92■■□□□ 1.1
TRIM28-201ENST00000253024 WWP1Q9H0M0 922 aa21.92■■□□□ 1.1
TRIM28-201ENST00000253024 ANLNQ9NQW6 1124 aa21.92■■□□□ 1.1
TRIM28-201ENST00000253024 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.92■■□□□ 1.1
TRIM28-201ENST00000253024 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.92■■□□□ 1.12e-6■■□□□ 11.5
TRIM28-201ENST00000253024 SMPD1P17405 629 aa21.91■■□□□ 1.1
TRIM28-201ENST00000253024 PKDCCQ504Y2 493 aa21.91■■□□□ 1.1
TRIM28-201ENST00000253024 RNF148Q8N7C7 305 aa21.91■■□□□ 1.1
TRIM28-201ENST00000253024 KBTBD7Q8WVZ9 684 aa21.91■■□□□ 1.1
TRIM28-201ENST00000253024 MARK4Q96L34 752 aa21.91■■□□□ 1.1
TRIM28-201ENST00000253024 FCRL3Q96P31 734 aaPredicted RBP21.91■■□□□ 1.1
TRIM28-201ENST00000253024 C2CD2Q9Y426 696 aa21.91■■□□□ 1.1
TRIM28-201ENST00000253024 SIP14410 1827 aa21.91■■□□□ 1.1
TRIM28-201ENST00000253024 FAM159BA6NKW6 160 aa21.91■■□□□ 1.1
TRIM28-201ENST00000253024 PROCP04070 461 aa21.91■■□□□ 1.1
TRIM28-201ENST00000253024 SLC34A1Q06495 639 aa21.91■■□□□ 1.1
TRIM28-201ENST00000253024 LAMC2Q13753 1193 aa21.91■■□□□ 1.1
TRIM28-201ENST00000253024 FBXO47Q5MNV8 452 aa21.91■■□□□ 1.1
TRIM28-201ENST00000253024 CERCAMQ5T4B2 595 aa21.91■■□□□ 1.1
TRIM28-201ENST00000253024 ZNF398Q8TD17 642 aa21.91■■□□□ 1.1
TRIM28-201ENST00000253024 SIRPGQ9P1W8 387 aa21.91■■□□□ 1.1
TRIM28-201ENST00000253024 FIS1Q9Y3D6 152 aa21.91■■□□□ 1.1
TRIM28-201ENST00000253024 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP21.9■■□□□ 1.1
TRIM28-201ENST00000253024 SPAG6O75602 509 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 MAMDC4Q6UXC1 1216 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 EXOC8Q8IYI6 725 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 ZNF567Q8N184 647 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 PHTF2Q8N3S3 785 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 ENDOVQ8N8Q3 282 aaKnown RBP21.9■■□□□ 1.1
TRIM28-201ENST00000253024 OR6J1Q8NGC5 347 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 SLC26A7Q8TE54 656 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 MTBPQ96DY7 904 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 KPNA7A9QM74 516 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 DCXO43602 365 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 STK10O94804 968 aaKnown RBP21.9■■□□□ 1.1
TRIM28-201ENST00000253024 ITGA2BP08514 1039 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 SLC26A2P50443 739 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 IZUMO2Q6UXV1 221 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 BEST2Q8NFU1 509 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 SH3TC2Q8TF17 1288 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 RNF139Q8WU17 664 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 KCNN1Q92952 543 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 TLE6Q9H808 572 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 KCNK4Q9NYG8 393 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 KLC1Q07866 573 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 BST2Q10589 180 aaKnown RBP21.9■■□□□ 1.1
TRIM28-201ENST00000253024 DPYSL2Q16555 572 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 MAVSQ7Z434 540 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 OSTM1Q86WC4 334 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 KRT82Q9NSB4 513 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 PIGVQ9NUD9 493 aa21.9■■□□□ 1.1
TRIM28-201ENST00000253024 ZNF638Q14966 1978 aaKnown RBP21.89■■□□□ 1.1
TRIM28-201ENST00000253024 MDM4O15151 490 aa21.89■■□□□ 1.1
TRIM28-201ENST00000253024 HIC1Q14526 733 aa21.89■■□□□ 1.1
TRIM28-201ENST00000253024 LPCAT4Q643R3 524 aa21.89■■□□□ 1.1
TRIM28-201ENST00000253024 ARNTL2Q8WYA1 636 aa21.89■■□□□ 1.1
TRIM28-201ENST00000253024 A0A0A0MRY4 1105 aa21.89■■□□□ 1.09
TRIM28-201ENST00000253024 SDR42E2A6NKP2 422 aa21.89■■□□□ 1.09
TRIM28-201ENST00000253024 NRP1O14786 923 aa21.89■■□□□ 1.09
TRIM28-201ENST00000253024 TEDDM1Q5T9Z0 273 aa21.89■■□□□ 1.09
TRIM28-201ENST00000253024 WSCD1Q658N2 575 aa21.89■■□□□ 1.09
TRIM28-201ENST00000253024 CCNJLQ8IV13 435 aa21.89■■□□□ 1.09
TRIM28-201ENST00000253024 ARRDC4Q8NCT1 418 aa21.89■■□□□ 1.09
TRIM28-201ENST00000253024 SPATA13Q96N96 652 aa21.89■■□□□ 1.09
TRIM28-201ENST00000253024 TAGLN3Q9UI15 199 aa21.89■■□□□ 1.09
TRIM28-201ENST00000253024 SMIM28A0A1B0GU29 152 aa21.88■■□□□ 1.09
TRIM28-201ENST00000253024 CAPN14A8MX76 684 aa21.88■■□□□ 1.09
TRIM28-201ENST00000253024 CIB2O75838 187 aa21.88■■□□□ 1.09
TRIM28-201ENST00000253024 TGDSO95455 350 aa21.88■■□□□ 1.09
TRIM28-201ENST00000253024 GSRP00390 522 aa21.88■■□□□ 1.09
TRIM28-201ENST00000253024 FGF3P11487 239 aaPredicted RBP21.88■■□□□ 1.09
TRIM28-201ENST00000253024 ZNF460Q14592 562 aa21.88■■□□□ 1.09
TRIM28-201ENST00000253024 QKIQ96PU8 341 aaKnown RBP eCLIP21.88■■□□□ 1.09
TRIM28-201ENST00000253024 LRRC4Q9HBW1 653 aa21.88■■□□□ 1.09
TRIM28-201ENST00000253024 NUDT5Q9UKK9 219 aa21.88■■□□□ 1.09
TRIM28-201ENST00000253024 GCATO75600 419 aa21.88■■□□□ 1.09
TRIM28-201ENST00000253024 CRHR1P34998 444 aa21.88■■□□□ 1.09
TRIM28-201ENST00000253024 BEX3Q00994 111 aa21.88■■□□□ 1.09
TRIM28-201ENST00000253024 PCLAFQ15004 111 aa21.88■■□□□ 1.09
TRIM28-201ENST00000253024 STRA8Q7Z7C7 330 aa21.88■■□□□ 1.09
TRIM28-201ENST00000253024 WDR75Q8IWA0 830 aaKnown RBP21.88■■□□□ 1.09
TRIM28-201ENST00000253024 PPFIBP2Q8ND30 876 aa21.88■■□□□ 1.09
TRIM28-201ENST00000253024 APPL2Q8NEU8 664 aa21.88■■□□□ 1.09
TRIM28-201ENST00000253024 HASPINQ8TF76 798 aa21.88■■□□□ 1.09
TRIM28-201ENST00000253024 SNX27Q96L92 541 aa21.88■■□□□ 1.09
TRIM28-201ENST00000253024 ATXN3LQ9H3M9 355 aa21.88■■□□□ 1.09
TRIM28-201ENST00000253024 WDR55Q9H6Y2 383 aaPredicted RBP21.88■■□□□ 1.09
TRIM28-201ENST00000253024 VRTNQ9H8Y1 702 aa21.88■■□□□ 1.09
TRIM28-201ENST00000253024 I6L893 689 aaPredicted RBP21.87■■□□□ 1.09
TRIM28-201ENST00000253024 SMAPO00193 183 aa21.87■■□□□ 1.09
TRIM28-201ENST00000253024 TRDMT1O14717 391 aaKnown RBP21.87■■□□□ 1.09
TRIM28-201ENST00000253024 SMIM24O75264 130 aa21.87■■□□□ 1.09
TRIM28-201ENST00000253024 SNAI1O95863 264 aaPredicted RBP21.87■■□□□ 1.09
TRIM28-201ENST00000253024 SRGAP2BP0DMP2 458 aa21.87■■□□□ 1.09
TRIM28-201ENST00000253024 CYP2C9P11712 490 aa21.87■■□□□ 1.09
TRIM28-201ENST00000253024 SERPINB5P36952 375 aa21.87■■□□□ 1.09
TRIM28-201ENST00000253024 GRM5P41594 1212 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms