RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SNX24Q9Y343 169 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 FRMPD1Q5SYB0 1578 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 DAB1O75553 588 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 CLCN1P35523 988 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 SLC27A1Q6PCB7 646 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 TREML1Q86YW5 311 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 ZFP28Q8NHY6 868 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 FEZF2Q8TBJ5 459 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 ACOX2Q99424 681 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 LRRC40Q9H9A6 602 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 PDE11AQ9HCR9 933 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 PSMC3IPQ9P2W1 217 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 COPS7AQ9UBW8 275 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 DCDC2Q9UHG0 476 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 SCAF8Q9UPN6 1271 aaKnown RBP6.28□□□□□ -1.4
SCN1A-217ENST00000637988 PCDHB3Q9Y5E6 796 aa6.28□□□□□ -1.4
SCN1A-217ENST00000637988 PPRC1Q5VV67 1664 aaKnown RBP6.27□□□□□ -1.4
SCN1A-217ENST00000637988 GABPB1Q06547 395 aaPredicted RBP6.27□□□□□ -1.4
SCN1A-217ENST00000637988 STX3Q13277 289 aa6.27□□□□□ -1.4
SCN1A-217ENST00000637988 ZSCAN26Q16670 478 aa6.27□□□□□ -1.4
SCN1A-217ENST00000637988 ZC3H14Q6PJT7 736 aaKnown RBP6.27□□□□□ -1.4
SCN1A-217ENST00000637988 KRT73Q86Y46 540 aa6.27□□□□□ -1.4
SCN1A-217ENST00000637988 GRIN3AQ8TCU5 1115 aa6.27□□□□□ -1.4
SCN1A-217ENST00000637988 NEK7Q8TDX7 302 aa6.27□□□□□ -1.4
SCN1A-217ENST00000637988 SETD7Q8WTS6 366 aaKnown RBP6.27□□□□□ -1.4
SCN1A-217ENST00000637988 C1orf54Q8WWF1 131 aa6.27□□□□□ -1.4
SCN1A-217ENST00000637988 GPR20Q99678 358 aa6.27□□□□□ -1.4
SCN1A-217ENST00000637988 SMAD5Q99717 465 aaKnown RBP6.27□□□□□ -1.4
SCN1A-217ENST00000637988 TARS2Q9BW92 718 aaKnown RBP6.27□□□□□ -1.4
SCN1A-217ENST00000637988 MTMR12Q9C0I1 747 aa6.27□□□□□ -1.4
SCN1A-217ENST00000637988 NECTIN3Q9NQS3 549 aa6.27□□□□□ -1.4
SCN1A-217ENST00000637988 SESN1Q9Y6P5 492 aa6.27□□□□□ -1.4
SCN1A-217ENST00000637988 MAGEB16A2A368 324 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 SLC15A5A6NIM6 579 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 MTRF1O75570 445 aaKnown RBP6.27□□□□□ -1.41
SCN1A-217ENST00000637988 LYNP07948 512 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 TYMPP19971 482 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 FLT3P36888 993 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 CLCN3P51790 818 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 TKTL1P51854 596 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 ARHGDIBP52566 201 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 LPIN1Q14693 890 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 SMTNL2Q2TAL5 461 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 CDC73Q6P1J9 531 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 PSRC1Q6PGN9 363 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-217ENST00000637988 BTNL9Q6UXG8 535 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 ANKMY2Q8IV38 441 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 ADGRG2Q8IZP9 1017 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 SYT15Q9BQS2 421 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 TMCO1Q9UM00 188 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 ZNF780BQ9Y6R6 833 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 PHLPP1O60346 1717 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 POLR1AO95602 1720 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-217ENST00000637988 C9J4A7 227 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 ATG13O75143 517 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 MED24O75448 989 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 CPSF4O95639 269 aaKnown RBP6.27□□□□□ -1.41
SCN1A-217ENST00000637988 HDCP19113 662 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 MAP2K2P36507 400 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 PURAQ00577 322 aaKnown RBP6.27□□□□□ -1.41
SCN1A-217ENST00000637988 DPCR1Q3MIW9 517 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 FBXO42Q6P3S6 717 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 LGI2Q8N0V4 545 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 GMCL1P1Q8NEA9 526 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 NAT9Q9BTE0 207 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 CDADC1Q9BWV3 514 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 GANQ9H2C0 597 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 RHBGQ9H310 441 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 UBA2Q9UBT2 640 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-217ENST00000637988 POLG2Q9UHN1 485 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 HEMK1Q9Y5R4 338 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-217ENST00000637988 NPHP3-ACAD11A0A0J9YXS1 232 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 SLC28A1O00337 649 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 PEX14O75381 377 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 FTH1P02794 183 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 RAD23AP54725 363 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 SP2Q02086 613 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 GRIK3Q13003 919 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 HDDC2Q7Z4H3 204 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 TTC29Q8NA56 475 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-217ENST00000637988 ATL1Q8WXF7 558 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 ARNTL2Q8WYA1 636 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 ABTB1Q969K4 478 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-217ENST00000637988 KIAA1143Q96AT1 154 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-217ENST00000637988 ZNF669Q96BR6 464 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-217ENST00000637988 TAAR1Q96RJ0 339 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 MAP3K14Q99558 947 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 CCDC134Q9H6E4 229 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 C3orf14Q9HBI5 128 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 ABCC13Q9NSE7 274 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 IL1RAPL1Q9NZN1 696 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 GNPTGQ9UJJ9 305 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 MAGEB3O15480 346 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 ADGRB2O60241 1585 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 ZNF135P52742 658 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-217ENST00000637988 CCL23P55773 120 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 RESTQ13127 1097 aa6.27□□□□□ -1.41
SCN1A-217ENST00000637988 TRIP10Q15642 601 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms