RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 FBXO44Q9H4M3 255 aa17.13■□□□□ 0.33
CLN3-264ENST00000637985 OSER1Q9NX31 292 aa17.13■□□□□ 0.33
CLN3-264ENST00000637985 ATP6V1DQ9Y5K8 247 aa17.13■□□□□ 0.33
CLN3-264ENST00000637985 PLXNA2O75051 1894 aa17.13■□□□□ 0.33
CLN3-264ENST00000637985 ATP8B3O60423 1300 aa17.13■□□□□ 0.33
CLN3-264ENST00000637985 CLIC2O15247 247 aa17.12■□□□□ 0.33
CLN3-264ENST00000637985 YKT6O15498 198 aa17.12■□□□□ 0.33
CLN3-264ENST00000637985 TIMM44O43615 452 aa17.12■□□□□ 0.33
CLN3-264ENST00000637985 ACTN4O43707 911 aaKnown RBP17.12■□□□□ 0.33
CLN3-264ENST00000637985 CKMT2P17540 419 aa17.12■□□□□ 0.33
CLN3-264ENST00000637985 PLA2G4AP47712 749 aa17.12■□□□□ 0.33
CLN3-264ENST00000637985 CYP2J2P51589 502 aa17.12■□□□□ 0.33
CLN3-264ENST00000637985 ZBTB16Q05516 673 aa17.12■□□□□ 0.33
CLN3-264ENST00000637985 CYP24A1Q07973 514 aa17.12■□□□□ 0.33
CLN3-264ENST00000637985 VAC14Q08AM6 782 aa17.12■□□□□ 0.33
CLN3-264ENST00000637985 WDR72Q3MJ13 1102 aa17.12■□□□□ 0.33
CLN3-264ENST00000637985 GOLGA5Q8TBA6 731 aa17.12■□□□□ 0.33
CLN3-264ENST00000637985 SMARCD1Q96GM5 515 aa17.12■□□□□ 0.33
CLN3-264ENST00000637985 SLC6A18Q96N87 628 aa17.12■□□□□ 0.33
CLN3-264ENST00000637985 CIPCQ9C0C6 399 aa17.12■□□□□ 0.33
CLN3-264ENST00000637985 TMEM245Q9H330 911 aa17.12■□□□□ 0.33
CLN3-264ENST00000637985 SGK2Q9HBY8 427 aa17.12■□□□□ 0.33
CLN3-264ENST00000637985 CLEC4EQ9ULY5 219 aa17.12■□□□□ 0.33
CLN3-264ENST00000637985 SSUH2Q9Y2M2 353 aa17.12■□□□□ 0.33
CLN3-264ENST00000637985 ZDHHC9Q9Y397 364 aa17.12■□□□□ 0.33
CLN3-264ENST00000637985 BOD1L1Q8NFC6 3051 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 A0A1B0GVL5 298 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 A0A1W2PPC4 97 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 KLRC4O43908 158 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 STC2O76061 302 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 KLKB1P03952 638 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 WNT1P04628 370 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 KRT10P13645 584 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 PFKFB1P16118 471 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 TNNI1P19237 187 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 EPHA8P29322 1005 aaPredicted RBP17.11■□□□□ 0.33
CLN3-264ENST00000637985 CHKAP35790 457 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 RPS14P62263 151 aaKnown RBP17.11■□□□□ 0.33
CLN3-264ENST00000637985 TNNC1P63316 161 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 KIAA0895LQ68EN5 471 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 PRICKLE2Q7Z3G6 844 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 GRAMD1CQ8IYS0 662 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 SKA1Q96BD8 255 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 CGRRF1Q99675 332 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 SMOQ99835 787 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 MED10Q9BTT4 135 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 EXOC1Q9NV70 894 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 NXF1Q9UBU9 619 aaKnown RBP17.11■□□□□ 0.33
CLN3-264ENST00000637985 ADAMTS1Q9UHI8 967 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 HPSEQ9Y251 543 aa17.11■□□□□ 0.33
CLN3-264ENST00000637985 MDM4O15151 490 aa17.1■□□□□ 0.33
CLN3-264ENST00000637985 AP1G2O75843 785 aa17.1■□□□□ 0.33
CLN3-264ENST00000637985 BEST1O76090 585 aa17.1■□□□□ 0.33
CLN3-264ENST00000637985 DXOO77932 396 aaKnown RBP17.1■□□□□ 0.33
CLN3-264ENST00000637985 DLATP10515 647 aaKnown RBP17.1■□□□□ 0.33
CLN3-264ENST00000637985 SFMBT2Q5VUG0 894 aa17.1■□□□□ 0.33
CLN3-264ENST00000637985 KDM7AQ6ZMT4 941 aa17.1■□□□□ 0.33
CLN3-264ENST00000637985 FUKQ8N0W3 1084 aa17.1■□□□□ 0.33
CLN3-264ENST00000637985 TMEM174Q8WUU8 243 aa17.1■□□□□ 0.33
CLN3-264ENST00000637985 CCDC127Q96BQ5 260 aa17.1■□□□□ 0.33
CLN3-264ENST00000637985 SCAND2PQ9GZW5 306 aaPredicted RBP17.1■□□□□ 0.33
CLN3-264ENST00000637985 CSNK1G1Q9HCP0 422 aa17.1■□□□□ 0.33
CLN3-264ENST00000637985 KRT82Q9NSB4 513 aa17.1■□□□□ 0.33
CLN3-264ENST00000637985 NUDT5Q9UKK9 219 aa17.1■□□□□ 0.33
CLN3-264ENST00000637985 ZNF510Q9Y2H8 683 aa17.1■□□□□ 0.33
CLN3-264ENST00000637985 PCDHB1Q9Y5F3 818 aa17.1■□□□□ 0.33
CLN3-264ENST00000637985 AHCTF1Q8WYP5 2266 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 FAM237AA0A1B0GTK4 181 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 KLK10O43240 276 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 EXOC3O60645 756 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 STAU1O95793 577 aaKnown RBP17.09■□□□□ 0.33
CLN3-264ENST00000637985 MT-CO3P00414 261 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 DNTTP04053 509 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 ACP1P24666 158 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 SYKP43405 635 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 ARRB1P49407 418 aaPredicted RBP17.09■□□□□ 0.33
CLN3-264ENST00000637985 BNIP3Q12983 259 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 STK4Q13043 487 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 KMT5BQ4FZB7 885 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 KANSL1Q7Z3B3 1105 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 LSMEM2Q8N112 164 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 KCNE4Q8WWG9 221 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 SLC2A11Q9BYW1 496 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 DPH1Q9BZG8 443 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 FBRSQ9HAH7 460 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 EBF2Q9HAK2 575 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 NMUR1Q9HB89 426 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 GDF3Q9NR23 364 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.09■□□□□ 0.33
CLN3-264ENST00000637985 SCML2Q9UQR0 700 aa17.09■□□□□ 0.33
CLN3-264ENST00000637985 A0A1W2PR77 199 aa17.08■□□□□ 0.32
CLN3-264ENST00000637985 RARGP13631 454 aa17.08■□□□□ 0.32
CLN3-264ENST00000637985 RXRGP48443 463 aa17.08■□□□□ 0.32
CLN3-264ENST00000637985 ERVPABLB-1P60509 514 aa17.08■□□□□ 0.32
CLN3-264ENST00000637985 E2F1Q01094 437 aa17.08■□□□□ 0.32
CLN3-264ENST00000637985 ARID5AQ03989 594 aa17.08■□□□□ 0.32
CLN3-264ENST00000637985 SLC9A9Q8IVB4 645 aa17.08■□□□□ 0.32
CLN3-264ENST00000637985 ZNF366Q8N895 744 aa17.08■□□□□ 0.32
CLN3-264ENST00000637985 KIAA0895Q8NCT3 520 aa17.08■□□□□ 0.32
CLN3-264ENST00000637985 TRIM4Q9C037 500 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms