RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 BRMS1LQ5PSV4 323 aa20.79■□□□□ 0.92
CLN3-250ENST00000636839 SNX30Q5VWJ9 437 aa20.79■□□□□ 0.92
CLN3-250ENST00000636839 UNC45BQ8IWX7 931 aa20.79■□□□□ 0.92
CLN3-250ENST00000636839 ARNTL2Q8WYA1 636 aa20.79■□□□□ 0.92
CLN3-250ENST00000636839 SLCO2A1Q92959 643 aa20.79■□□□□ 0.92
CLN3-250ENST00000636839 GKN1Q9NS71 199 aa20.79■□□□□ 0.92
CLN3-250ENST00000636839 ZNF446Q9NWS9 450 aa20.79■□□□□ 0.92
CLN3-250ENST00000636839 HCFC1R1Q9NWW0 138 aa20.79■□□□□ 0.92
CLN3-250ENST00000636839 HS3ST4Q9Y661 456 aa20.79■□□□□ 0.92
CLN3-250ENST00000636839 ZNF487B1APH4 448 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 H3BNC9 293 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 F11P03951 625 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 FAM153BP0C7A2 387 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 RBP3P10745 1247 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 GJA1P17302 382 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 ERCC2P18074 760 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 TPI1P60174 286 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 FAM153CQ494X1 144 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 HECTD3Q5T447 861 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 PIK3R6Q5UE93 754 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 DRICH1Q6PGQ1 229 aaPredicted RBP20.78■□□□□ 0.92
CLN3-250ENST00000636839 GAREM2Q75VX8 874 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 GSTA5Q7RTV2 222 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 ADGRD2Q7Z7M1 963 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 SEC14L1Q92503 715 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 ZBTB9Q96C00 473 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 OLA1Q9NTK5 396 aaKnown RBP20.78■□□□□ 0.92
CLN3-250ENST00000636839 FAM153AQ9UHL3 310 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 MAFFQ9ULX9 164 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 NEU3Q9UQ49 428 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 MFSD11O43934 449 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 CLASP2O75122 1294 aaKnown RBP20.78■□□□□ 0.92
CLN3-250ENST00000636839 ATP5C1P36542 298 aaKnown RBP20.78■□□□□ 0.92
CLN3-250ENST00000636839 BRD3Q15059 726 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 TRIP4Q15650 581 aaPredicted RBP20.78■□□□□ 0.92
CLN3-250ENST00000636839 TXNDC8Q6A555 127 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 TTC13Q8NBP0 860 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 PDZD8Q8NEN9 1154 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 WBP2Q969T9 261 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 HAPLN3Q96S86 360 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 LRRC3Q9BY71 257 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 NACA2Q9H009 215 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 OSBPL2Q9H1P3 480 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 DTLQ9NZJ0 730 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 RCOR3Q9P2K3 495 aaPredicted RBP20.78■□□□□ 0.92
CLN3-250ENST00000636839 DOCK6Q96HP0 2047 aa20.78■□□□□ 0.92
CLN3-250ENST00000636839 CCDC151A5D8V7 595 aa20.77■□□□□ 0.92
CLN3-250ENST00000636839 RFXAPO00287 272 aa20.77■□□□□ 0.92
CLN3-250ENST00000636839 DCLK1O15075 740 aa20.77■□□□□ 0.92
CLN3-250ENST00000636839 LRG1P02750 347 aa20.77■□□□□ 0.92
CLN3-250ENST00000636839 TGM2P21980 687 aa20.77■□□□□ 0.92
CLN3-250ENST00000636839 EPHB2P29323 1055 aa20.77■□□□□ 0.92
CLN3-250ENST00000636839 ZNF697Q5TEC3 545 aa20.77■□□□□ 0.92
CLN3-250ENST00000636839 RWDD4Q6NW29 188 aaKnown RBP20.77■□□□□ 0.92
CLN3-250ENST00000636839 ALLCQ8N6M5 410 aa20.77■□□□□ 0.92
CLN3-250ENST00000636839 NPWQ8N729 165 aa20.77■□□□□ 0.92
CLN3-250ENST00000636839 FAM71DQ8N9W8 422 aa20.77■□□□□ 0.92
CLN3-250ENST00000636839 OVCA2Q8WZ82 227 aa20.77■□□□□ 0.92
CLN3-250ENST00000636839 MAN1C1Q9NR34 630 aa20.77■□□□□ 0.92
CLN3-250ENST00000636839 DNMT3LQ9UJW3 386 aa20.77■□□□□ 0.92
CLN3-250ENST00000636839 DRG1Q9Y295 367 aaKnown RBP20.77■□□□□ 0.92
CLN3-250ENST00000636839 GOLGA6L7A0A1B0GV03 622 aa20.77■□□□□ 0.91
CLN3-250ENST00000636839 H7C0C1 242 aa20.77■□□□□ 0.91
CLN3-250ENST00000636839 SGK1O00141 431 aa20.77■□□□□ 0.91
CLN3-250ENST00000636839 IFNB1P01574 187 aa20.77■□□□□ 0.91
CLN3-250ENST00000636839 IGLV3-27P01718 113 aa20.77■□□□□ 0.91
CLN3-250ENST00000636839 ITGAVP06756 1048 aa20.77■□□□□ 0.91
CLN3-250ENST00000636839 ATP5OP48047 213 aa20.77■□□□□ 0.91
CLN3-250ENST00000636839 IRAK1P51617 712 aa20.77■□□□□ 0.91
CLN3-250ENST00000636839 CYP4F8P98187 520 aa20.77■□□□□ 0.91
CLN3-250ENST00000636839 BEND6Q5SZJ8 279 aaPredicted RBP20.77■□□□□ 0.91
CLN3-250ENST00000636839 CCDC149Q6ZUS6 474 aa20.77■□□□□ 0.91
CLN3-250ENST00000636839 TMC8Q8IU68 726 aa20.77■□□□□ 0.91
CLN3-250ENST00000636839 TAB3Q8N5C8 712 aaPredicted RBP20.77■□□□□ 0.91
CLN3-250ENST00000636839 GDPD5Q8WTR4 605 aa20.77■□□□□ 0.91
CLN3-250ENST00000636839 MYEOVQ96EZ4 313 aa20.77■□□□□ 0.91
CLN3-250ENST00000636839 TRPC7Q9HCX4 862 aa20.77■□□□□ 0.91
CLN3-250ENST00000636839 SMPD4Q9NXE4 827 aa20.77■□□□□ 0.91
CLN3-250ENST00000636839 GRHL1Q9NZI5 618 aa20.77■□□□□ 0.91
CLN3-250ENST00000636839 REV3LO60673 3130 aa20.76■□□□□ 0.91
CLN3-250ENST00000636839 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.76■□□□□ 0.91
CLN3-250ENST00000636839 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.76■□□□□ 0.91
CLN3-250ENST00000636839 SCAMP3O14828 347 aaKnown RBP20.76■□□□□ 0.91
CLN3-250ENST00000636839 OAS1P00973 400 aaKnown RBP20.76■□□□□ 0.91
CLN3-250ENST00000636839 KRT14P02533 472 aa20.76■□□□□ 0.91
CLN3-250ENST00000636839 IVDP26440 423 aa20.76■□□□□ 0.91
CLN3-250ENST00000636839 GABRR2P28476 465 aa20.76■□□□□ 0.91
CLN3-250ENST00000636839 MLLT6P55198 1093 aaPredicted RBP20.76■□□□□ 0.91
CLN3-250ENST00000636839 DARS2Q6PI48 645 aaKnown RBP20.76■□□□□ 0.91
CLN3-250ENST00000636839 RUNDC3BQ96NL0 473 aa20.76■□□□□ 0.91
CLN3-250ENST00000636839 CORO1BQ9BR76 489 aa20.76■□□□□ 0.91
CLN3-250ENST00000636839 RAB17Q9H0T7 212 aa20.76■□□□□ 0.91
CLN3-250ENST00000636839 MPP6Q9NZW5 540 aa20.76■□□□□ 0.91
CLN3-250ENST00000636839 ASIC3Q9UHC3 531 aa20.76■□□□□ 0.91
CLN3-250ENST00000636839 MCF2LO15068 1137 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 TP73O15350 636 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 LPXNO60711 386 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 PTK6Q13882 451 aa20.75■□□□□ 0.91
CLN3-250ENST00000636839 HLTFQ14527 1009 aaKnown RBP eCLIP20.75■□□□□ 0.91
CLN3-250ENST00000636839 MS4A13Q5J8X5 152 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms