RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 MT-ND5P03915 603 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 CPA1P15085 419 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 MMP8P22894 467 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 SLC8A1P32418 973 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 STAT6P42226 847 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 AGTR2P50052 363 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 ELF2Q15723 593 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 PTPROQ16827 1216 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 HMBOX1Q6NT76 420 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 LRIG3Q6UXM1 1119 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 FAM47BQ8NA70 645 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 C7orf57Q8NEG2 295 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 ABHD5Q8WTS1 349 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 ZFPM2Q8WW38 1151 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 LRTOMTQ8WZ04 291 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 INPP5DQ92835 1189 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 RUNDC1Q96C34 613 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 PHF21BQ96EK2 531 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 ISCUQ9H1K1 167 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 FAM204AQ9H8W3 233 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 RMI1Q9H9A7 625 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 SIRT3Q9NTG7 399 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-208ENST00000625916 LAMP3Q9UQV4 416 aa3.39□□□□□ -1.87
SCN1A-208ENST00000625916 A0A087WYN8 130 aa3.38□□□□□ -1.87
SCN1A-208ENST00000625916 RFPL1O75677 317 aa3.38□□□□□ -1.87
SCN1A-208ENST00000625916 COMPP49747 757 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-208ENST00000625916 HILS1P60008 231 aa3.38□□□□□ -1.87
SCN1A-208ENST00000625916 ROR2Q01974 943 aaKnown RBP3.38□□□□□ -1.87
SCN1A-208ENST00000625916 DMWDQ09019 674 aa3.38□□□□□ -1.87
SCN1A-208ENST00000625916 GPS1Q13098 491 aa3.38□□□□□ -1.87
SCN1A-208ENST00000625916 SEMA3BQ13214 749 aa3.38□□□□□ -1.87
SCN1A-208ENST00000625916 POLD3Q15054 466 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-208ENST00000625916 OTUD3Q5T2D3 398 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-208ENST00000625916 RNF220Q5VTB9 566 aa3.38□□□□□ -1.87
SCN1A-208ENST00000625916 PARM1Q6UWI2 310 aa3.38□□□□□ -1.87
SCN1A-208ENST00000625916 RNF44Q7L0R7 432 aa3.38□□□□□ -1.87
SCN1A-208ENST00000625916 RTL10Q7L3V2 364 aa3.38□□□□□ -1.87
SCN1A-208ENST00000625916 OR52L2PQ8NGH6 319 aa3.38□□□□□ -1.87
SCN1A-208ENST00000625916 ASB12Q8WXK4 309 aa3.38□□□□□ -1.87
SCN1A-208ENST00000625916 PMM1Q92871 262 aa3.38□□□□□ -1.87
SCN1A-208ENST00000625916 WBP1Q96G27 269 aa3.38□□□□□ -1.87
SCN1A-208ENST00000625916 APIPQ96GX9 242 aa3.38□□□□□ -1.87
SCN1A-208ENST00000625916 SNX22Q96L94 193 aa3.38□□□□□ -1.87
SCN1A-208ENST00000625916 CDH19Q9H159 772 aa3.38□□□□□ -1.87
SCN1A-208ENST00000625916 CDT1Q9H211 546 aa3.38□□□□□ -1.87
SCN1A-208ENST00000625916 HEYLQ9NQ87 328 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-208ENST00000625916 ZIM2Q9NZV7 527 aa3.38□□□□□ -1.87
SCN1A-208ENST00000625916 OR6C75A6NL08 312 aa3.37□□□□□ -1.87
SCN1A-208ENST00000625916 MDM4O15151 490 aa3.37□□□□□ -1.87
SCN1A-208ENST00000625916 MGEA5O60502 916 aa3.37□□□□□ -1.87
SCN1A-208ENST00000625916 CCNT2O60583 730 aaKnown RBP3.37□□□□□ -1.87
SCN1A-208ENST00000625916 LDB3O75112 727 aa3.37□□□□□ -1.87
SCN1A-208ENST00000625916 SGPL1O95470 568 aa3.37□□□□□ -1.87
SCN1A-208ENST00000625916 WNT1P04628 370 aa3.37□□□□□ -1.87
SCN1A-208ENST00000625916 U2AF1L5P0DN76 240 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-208ENST00000625916 MYF5P13349 255 aa3.37□□□□□ -1.87
SCN1A-208ENST00000625916 PKMP14618 531 aaKnown RBP3.37□□□□□ -1.87
SCN1A-208ENST00000625916 ATICP31939 592 aa3.37□□□□□ -1.87
SCN1A-208ENST00000625916 PCYT1AP49585 367 aa3.37□□□□□ -1.87
SCN1A-208ENST00000625916 ART1P52961 327 aa3.37□□□□□ -1.87
SCN1A-208ENST00000625916 U2AF1Q01081 240 aaKnown RBP eCLIP3.37□□□□□ -1.87
SCN1A-208ENST00000625916 TMEM196Q5HYL7 178 aa3.37□□□□□ -1.87
SCN1A-208ENST00000625916 PPP4R4Q6NUP7 873 aa3.37□□□□□ -1.87
SCN1A-208ENST00000625916 FBXL22Q6P050 247 aa3.37□□□□□ -1.87
SCN1A-208ENST00000625916 ZNF474Q6S9Z5 364 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-208ENST00000625916 Q6ZTK2 550 aa3.37□□□□□ -1.87
SCN1A-208ENST00000625916 CTU1Q7Z7A3 348 aaKnown RBP3.37□□□□□ -1.87
SCN1A-208ENST00000625916 CLMNQ96JQ2 1002 aa3.37□□□□□ -1.87
SCN1A-208ENST00000625916 EIF3CQ99613 913 aaKnown RBP3.37□□□□□ -1.87
SCN1A-208ENST00000625916 DCLK3Q9C098 648 aa3.37□□□□□ -1.87
SCN1A-208ENST00000625916 BRINP2Q9C0B6 783 aa3.37□□□□□ -1.87
SCN1A-208ENST00000625916 AS3MTQ9HBK9 375 aa3.37□□□□□ -1.87
SCN1A-208ENST00000625916 C1orf112Q9NSG2 853 aa3.37□□□□□ -1.87
SCN1A-208ENST00000625916 NOP58Q9Y2X3 529 aaKnown RBP3.37□□□□□ -1.87
SCN1A-208ENST00000625916 CYP1A2P05177 515 aa3.36□□□□□ -1.87
SCN1A-208ENST00000625916 RHCEP18577 417 aa3.36□□□□□ -1.87
SCN1A-208ENST00000625916 GSTM5P46439 218 aa3.36□□□□□ -1.87
SCN1A-208ENST00000625916 CRYZQ08257 329 aaKnown RBP3.36□□□□□ -1.87
SCN1A-208ENST00000625916 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.36□□□□□ -1.87
SCN1A-208ENST00000625916 TTC39AQ5SRH9 613 aa3.36□□□□□ -1.87
SCN1A-208ENST00000625916 FAM90A2PQ658T7 463 aa3.36□□□□□ -1.87
SCN1A-208ENST00000625916 ABLIM2Q6H8Q1 611 aa3.36□□□□□ -1.87
SCN1A-208ENST00000625916 CCDC149Q6ZUS6 474 aa3.36□□□□□ -1.87
SCN1A-208ENST00000625916 PRR26Q8N8Z3 221 aa3.36□□□□□ -1.87
SCN1A-208ENST00000625916 TMEM255BQ8WV15 326 aa3.36□□□□□ -1.87
SCN1A-208ENST00000625916 GPR78Q96P69 363 aa3.36□□□□□ -1.87
SCN1A-208ENST00000625916 WDR24Q96S15 920 aa3.36□□□□□ -1.87
SCN1A-208ENST00000625916 ABHD14AQ9BUJ0 271 aa3.36□□□□□ -1.87
SCN1A-208ENST00000625916 CDCP1Q9H5V8 836 aa3.36□□□□□ -1.87
SCN1A-208ENST00000625916 KRCC1Q9NPI7 259 aaPredicted RBP3.36□□□□□ -1.87
SCN1A-208ENST00000625916 TYW1Q9NV66 732 aaKnown RBP3.36□□□□□ -1.87
SCN1A-208ENST00000625916 NCKIPSDQ9NZQ3 722 aa3.36□□□□□ -1.87
SCN1A-208ENST00000625916 TMOD4Q9NZQ9 345 aa3.36□□□□□ -1.87
SCN1A-208ENST00000625916 NOB1Q9ULX3 412 aaKnown RBP3.36□□□□□ -1.87
SCN1A-208ENST00000625916 PTGDR2Q9Y5Y4 395 aa3.36□□□□□ -1.87
SCN1A-208ENST00000625916 CBFA2T3O75081 653 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 COQ9O75208 318 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 IL18RAPO95256 599 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 NFATC1O95644 943 aa3.35□□□□□ -1.87
SCN1A-208ENST00000625916 ANXA2P07355 339 aaKnown RBP3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms