RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 SLC38A7Q9NVC3 462 aa10.96□□□□□ -0.66
CUX1-221ENST00000622516 SENP1Q9P0U3 644 aa10.96□□□□□ -0.66
CUX1-221ENST00000622516 ZNF236Q9UL36 1845 aa10.96□□□□□ -0.66
CUX1-221ENST00000622516 DGKIO75912 1065 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 ERCC2P18074 760 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 ADRA1BP35368 520 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 GMPRP36959 345 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 NR2C2P49116 596 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 PGFP49763 221 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 KCNJ2P63252 427 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 IRX4P78413 519 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 OTOAQ7RTW8 1153 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 NPWQ8N729 165 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 NT5C3BQ969T7 300 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 OLFM3Q96PB7 478 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 ACTR5Q9H9F9 607 aaPredicted RBP10.95□□□□□ -0.66
CUX1-221ENST00000622516 WDR6Q9NNW5 1121 aaKnown RBP10.95□□□□□ -0.66
CUX1-221ENST00000622516 PRKAG3Q9UGI9 489 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 IQANK1A0A1B0GTG1 560 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 E2F8A0AVK6 867 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 GPR182O15218 404 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 SRGAP2BP0DMP2 458 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 PRKAR2AP13861 404 aaKnown RBP10.95□□□□□ -0.66
CUX1-221ENST00000622516 ZFXP17010 805 aaPredicted RBP10.95□□□□□ -0.66
CUX1-221ENST00000622516 LHX1P48742 406 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 NUMBP49757 651 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 ARCQ7LC44 396 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 PID1Q7Z2X4 250 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 ZNF567Q8N184 647 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 OR10T2Q8NGX3 314 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 KCTD13Q8WZ19 329 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 CELF6Q96J87 481 aaKnown RBP10.95□□□□□ -0.66
CUX1-221ENST00000622516 APOL2Q9BQE5 337 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 SIK2Q9H0K1 926 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 ECT2Q9H8V3 914 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 UBP1Q9NZI7 540 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 SLC12A4Q9UP95 1085 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 SHROOM3Q8TF72 1996 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 CCDC78A2IDD5 438 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 C2orf71A6NGG8 1288 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 SMAPO00193 183 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 SEPT4O43236 478 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 ADAMTS4O75173 837 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 APOEP02649 317 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 MGAT1P26572 445 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 FCGRTP55899 365 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 LPIN1Q14693 890 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 PLEKHG4Q58EX7 1191 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 SLC26A11Q86WA9 606 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 PIAS4Q8N2W9 510 aaPredicted RBP10.95□□□□□ -0.66
CUX1-221ENST00000622516 ZNF276Q8N554 614 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 RNF34Q969K3 372 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 PGBD4Q96DM1 585 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 SLC2A13Q96QE2 648 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 EBNA1BP2Q99848 306 aaKnown RBP10.95□□□□□ -0.66
CUX1-221ENST00000622516 TKTL2Q9H0I9 626 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 KLC4Q9NSK0 619 aa10.95□□□□□ -0.66
CUX1-221ENST00000622516 A0A0A0MRY4 1105 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 H3BRJ5 948 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 B4GALT3O60512 393 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 EDF1O60869 148 aaKnown RBP10.94□□□□□ -0.66
CUX1-221ENST00000622516 LTFP02788 710 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 SCNN1AP37088 669 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 MGAT3Q09327 533 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 WASHC5Q12768 1159 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 XRCC4Q13426 336 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 SDHAF4Q5VUM1 108 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 HACE1Q8IYU2 909 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 ERP27Q96DN0 273 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 SPATA13Q96N96 652 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 PHACTR1Q9C0D0 580 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 DNAI2Q9GZS0 605 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 ZNF395Q9H8N7 513 aaPredicted RBP10.94□□□□□ -0.66
CUX1-221ENST00000622516 CYLDQ9NQC7 956 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 RNF186Q9NXI6 227 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 CCDC195A0A1B0GUA6 201 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 HMX2A2RU54 273 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 HHLA1C9JL84 531 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 CA12O43570 354 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 RASSF9O75901 435 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 ZWINTO95229 277 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 BGNP21810 368 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 TPI1P60174 286 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 IRF5Q13568 498 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 CYB5D1Q6P9G0 228 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 SH2D5Q6ZV89 423 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 COLEC11Q9BWP8 271 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 WDCPQ9H6R7 721 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 GIT1Q9Y2X7 761 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 NUMBLQ9Y6R0 609 aa10.94□□□□□ -0.66
CUX1-221ENST00000622516 EPHB2P29323 1055 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 NCALDP61601 193 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 DPYSQ14117 519 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 CD300LGQ6UXG3 332 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 BHLHA9Q7RTU4 235 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 ZNF280BQ86YH2 543 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 RFWD2Q8NHY2 731 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 ATXN7L3BQ96GX2 97 aa10.93□□□□□ -0.66
CUX1-221ENST00000622516 OXNAD1Q96HP4 312 aaPredicted RBP10.93□□□□□ -0.66
CUX1-221ENST00000622516 SRPK1Q96SB4 655 aaKnown RBP10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms