RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	KRT82	Q9NSB4	513 aa		13.24	□□□□□ -0.29
UPF1-208	ENST00000600012	TRPM5	Q9NZQ8	1165 aa		13.24	□□□□□ -0.29
UPF1-208	ENST00000600012	MYOF	Q9NZM1	2061 aa		13.24	□□□□□ -0.29
UPF1-208	ENST00000600012		A0A0A6YYK5	440 aa	Predicted RBP	13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	BCLAF3	A2AJT9	711 aa	Known RBP	13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	PIK3R2	O00459	728 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	DCLK1	O15075	740 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	GJB6	O95452	261 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	ERBB2	P04626	1255 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	CALB1	P05937	261 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	SETSIP	P0DME0	302 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	GBP1	P32455	592 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	OPRD1	P41143	372 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	PPP3CC	P48454	512 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	BST2	Q10589	180 aa	Known RBP	13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	USP39	Q53GS9	565 aa	Known RBP	13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	TCEAL6	Q6IPX3	200 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	SYT10	Q6XYQ8	523 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	SLC35G2	Q8TBE7	412 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	MYCBPAP	Q8TBZ2	947 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	IPO4	Q8TEX9	1081 aa	Known RBP	13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	USP33	Q8TEY7	942 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	TCEAL3	Q969E4	200 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	TRIM11	Q96F44	468 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	NOX5	Q96PH1	765 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	WDR24	Q96S15	920 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	EDEM2	Q9BV94	578 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	NUP85	Q9BW27	656 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	TTLL2	Q9BWV7	592 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	LINC00597	Q9H2U6	94 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	SYNC	Q9H7C4	482 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	ST7	Q9NRC1	585 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	CTTNBP2NL	Q9P2B4	639 aa		13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	MYO18A	Q92614	2054 aa	Known RBP	13.23	□□□□□ -0.29
UPF1-208	ENST00000600012	GRID2IP	A4D2P6	1211 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	GOLGA8S	H3BPF8	625 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	LEFTY2	O00292	366 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	SLC9A3R1	O14745	358 aa	Predicted RBP	13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	FANCG	O15287	622 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	AP1G2	O75843	785 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	BEST1	O76090	585 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	KCNK5	O95279	499 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	OLFM2	O95897	454 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	FAM200B	P0CF97	657 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	MYBL1	P10243	752 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	CACNA2D1	P54289	1103 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	USP46	P62068	366 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	ETF1	P62495	437 aa	Known RBP	13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	SLC7A9	P82251	487 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	PMS2CL	Q68D20	193 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	PMF1	Q6P1K2	205 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	CLEC20A	Q6ZU45	233 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	RASSF3	Q86WH2	238 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	RHOT2	Q8IXI1	618 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	MSANTD4	Q8NCY6	345 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	ZNF564	Q8TBZ8	553 aa	Predicted RBP	13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	ZNF592	Q92610	1267 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	VCPIP1	Q96JH7	1222 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	C8orf48	Q96LL4	319 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	DUSP16	Q9BY84	665 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	GOLPH3	Q9H4A6	298 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	TMEM30A	Q9NV96	361 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	DNAI1	Q9UI46	699 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	MMP17	Q9ULZ9	603 aa		13.22	□□□□□ -0.29
UPF1-208	ENST00000600012	PLXND1	Q9Y4D7	1925 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	PI4KA	P42356	2102 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	ZNF840P	A6NDX5	716 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012		E5RJQ4	531 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012		F8VP50	259 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012		K7EQS6	105 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	KIF2A	O00139	706 aa	Predicted RBP	13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	XPO1	O14980	1071 aa	Known RBP	13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	PALM	O75781	387 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	GABBR2	O75899	941 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	OAS1	P00973	400 aa	Known RBP	13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	CYP17A1	P05093	508 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	SEC13	P55735	322 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	MAP3K7CL	P57077	242 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	MRPS21	P82921	87 aa	Known RBP	13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	ZXDB	P98169	803 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	GAB4	Q2WGN9	574 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	C2orf27A	Q580R0	203 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	ANO7	Q6IWH7	933 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	DNAJC24	Q6P3W2	148 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	FAM183BP	Q6ZVS7	135 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	XYLT1	Q86Y38	959 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	RNF10	Q8N5U6	811 aa	Known RBP	13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	TPCN2	Q8NHX9	752 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	SLC35F5	Q8WV83	523 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	C18orf8	Q96DM3	657 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	SMARCD1	Q96GM5	515 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	BTBD6	Q96KE9	485 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	SLITRK1	Q96PX8	696 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	ALS2CR12	Q96Q35	445 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	SMO	Q99835	787 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	SLC4A5	Q9BY07	1137 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	TPSD1	Q9BZJ3	242 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	TRIM7	Q9C029	511 aa		13.21	□□□□□ -0.29
UPF1-208	ENST00000600012	STRIP2	Q9ULQ0	834 aa		13.21	□□□□□ -0.29

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