RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 SFMBT1Q9UHJ3 866 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 PCDHGC3Q9UN70 934 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 SOD2P04179 222 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 ATXN8OSP0DMR3 200 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 HNRNPH3P31942 346 aaKnown RBP10.11□□□□□ -0.79
LIG3-216ENST00000593099 GATMP50440 423 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 SERPINA13PQ6UXR4 307 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 TRPV1Q8NER1 839 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 TSPAN17Q96FV3 270 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 IGSF21Q96ID5 467 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 MPP4Q96JB8 637 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 FAM161BQ96MY7 647 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 B3GNT5Q9BYG0 378 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 C20orf96Q9NUD7 363 aaPredicted RBP10.11□□□□□ -0.79
LIG3-216ENST00000593099 TRHDEQ9UKU6 1024 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 NAALADL1Q9UQQ1 740 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 TARSL2A2RTX5 802 aaKnown RBP10.11□□□□□ -0.79
LIG3-216ENST00000593099 ZSCAN5CA6NGD5 496 aaPredicted RBP10.11□□□□□ -0.79
LIG3-216ENST00000593099 SLC38A8A6NNN8 435 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 PYGLP06737 847 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 EN2P19622 333 aaPredicted RBP10.11□□□□□ -0.79
LIG3-216ENST00000593099 SLC25A52Q3SY17 297 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 AGMOQ6ZNB7 445 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 WDR75Q8IWA0 830 aaKnown RBP10.11□□□□□ -0.79
LIG3-216ENST00000593099 STAMBPL1Q96FJ0 436 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 SNRNP25Q9BV90 132 aaKnown RBP10.11□□□□□ -0.79
LIG3-216ENST00000593099 CACNG4Q9UBN1 327 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 NOVA2Q9UNW9 492 aaKnown RBP10.11□□□□□ -0.79
LIG3-216ENST00000593099 PLAAQ9Y263 795 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 YIPF1Q9Y548 306 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 COL24A1Q17RW2 1714 aa10.11□□□□□ -0.79
LIG3-216ENST00000593099 MAST2Q6P0Q8 1798 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 FAM155AB1AL88 458 aaPredicted RBP10.1□□□□□ -0.79
LIG3-216ENST00000593099 SEC31AO94979 1220 aaKnown RBP10.1□□□□□ -0.79
LIG3-216ENST00000593099 VNN1O95497 513 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 HSPA8P11142 646 aaKnown RBP10.1□□□□□ -0.79
LIG3-216ENST00000593099 PSMD7P51665 324 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 PTK6Q13882 451 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 STAT4Q14765 748 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 HSP90AA5PQ58FG0 334 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.1□□□□□ -0.79
LIG3-216ENST00000593099 STRADAQ7RTN6 431 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 RUBCNQ92622 972 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 ULK4Q96C45 1275 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 CPXM1Q96SM3 734 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 VAT1Q99536 393 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 UTP6Q9NYH9 597 aaKnown RBP10.1□□□□□ -0.79
LIG3-216ENST00000593099 DEC1Q9P2X7 70 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 CHMP2BQ9UQN3 213 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 ZNF831Q5JPB2 1677 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 MYH7P12883 1935 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 HACD1B0YJ81 288 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 RASA4BC9J798 803 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 HGSO14964 777 aaPredicted RBP10.1□□□□□ -0.79
LIG3-216ENST00000593099 RASA4O43374 803 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 CRTAMO95727 393 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 HIST1H2AGP0C0S8 130 aaPredicted RBP10.1□□□□□ -0.79
LIG3-216ENST00000593099 HIST1H2ADP20671 130 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 MAP4P27816 1152 aaKnown RBP10.1□□□□□ -0.79
LIG3-216ENST00000593099 RGS4P49798 205 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 BCL2L1Q07817 233 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 PDCD2Q16342 344 aaPredicted RBP10.1□□□□□ -0.79
LIG3-216ENST00000593099 AARS2Q5JTZ9 985 aaKnown RBP10.1□□□□□ -0.79
LIG3-216ENST00000593099 TTC19Q6DKK2 380 aaPredicted RBP10.1□□□□□ -0.79
LIG3-216ENST00000593099 B3GNT9Q6UX72 402 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 METTL3Q86U44 580 aaKnown RBP10.1□□□□□ -0.79
LIG3-216ENST00000593099 KATNAL2Q8IYT4 538 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 ING5Q8WYH8 240 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 ZNF516Q92618 1163 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 HIST1H2AHQ96KK5 128 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 BTN2A3PQ96KV6 586 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 HIST1H2AJQ99878 128 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 H2AFJQ9BTM1 129 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 LATS2Q9NRM7 1088 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 HACD3Q9P035 362 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 CLUHO75153 1309 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 AKAP11Q9UKA4 1901 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 RAD51CO43502 376 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 SMIM24O75264 130 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 ITGALP20701 1170 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 KDELR1P24390 212 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 AIF1P55008 147 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 VCPP55072 806 aaKnown RBP10.1□□□□□ -0.79
LIG3-216ENST00000593099 POLR2LP62875 67 aaKnown RBP10.1□□□□□ -0.79
LIG3-216ENST00000593099 SGCGQ13326 291 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 PDAP1Q13442 181 aaKnown RBP10.1□□□□□ -0.79
LIG3-216ENST00000593099 CASP8Q14790 479 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 CCDC38Q502W7 563 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 MRNIPQ6NTE8 343 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 TRIM67Q6ZTA4 783 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 SLC26A9Q7LBE3 791 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 LRRC49Q8IUZ0 686 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 KLHDC9Q8NEP7 349 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 HTR3CQ8WXA8 447 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 FICDQ9BVA6 458 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 ISCUQ9H1K1 167 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 ZFP14Q9HCL3 533 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 GDAP2Q9NXN4 497 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 KLHL14Q9P2G3 628 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 SUFUQ9UMX1 484 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms