RNA–Protein interactions for RNA: ENST00000585241.5

SS18-226, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 774 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-226ENST00000585241 DCLK3Q9C098 648 aa16.71■□□□□ 0.27
SS18-226ENST00000585241 PRDM16Q9HAZ2 1276 aa16.71■□□□□ 0.27
SS18-226ENST00000585241 CLDND1Q9NY35 253 aa16.71■□□□□ 0.27
SS18-226ENST00000585241 SLC12A6Q9UHW9 1150 aa16.71■□□□□ 0.27
SS18-226ENST00000585241 XPO7Q9UIA9 1087 aaKnown RBP16.71■□□□□ 0.27
SS18-226ENST00000585241 NEU3Q9UQ49 428 aa16.71■□□□□ 0.27
SS18-226ENST00000585241 HS3ST4Q9Y661 456 aa16.71■□□□□ 0.27
SS18-226ENST00000585241 NUP210Q8TEM1 1887 aaPredicted RBP16.7■□□□□ 0.26
SS18-226ENST00000585241 FAM72CH0Y354 149 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 H3BRJ5 948 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 PDE2AO00408 941 aaPredicted RBP16.7■□□□□ 0.26
SS18-226ENST00000585241 FGGP02679 453 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 KLKB1P03952 638 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 HMBSP08397 361 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 FSHRP23945 695 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 HARS2P49590 506 aaKnown RBP16.7■□□□□ 0.26
SS18-226ENST00000585241 CKAP4Q07065 602 aaKnown RBP16.7■□□□□ 0.26
SS18-226ENST00000585241 MS4A13Q5J8X5 152 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 FAM72AQ5TYM5 149 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 FAM72DQ6L9T8 149 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 FAM72BQ86X60 149 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 DDX42Q86XP3 938 aaKnown RBP eCLIP16.7■□□□□ 0.26
SS18-226ENST00000585241 CCDC50Q8IVM0 306 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 NPAS3Q8IXF0 933 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 KIAA1958Q8N8K9 716 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 WBP2Q969T9 261 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 MS4A14Q96JA4 679 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 FAM161BQ96MY7 647 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 CSPG4P5Q96PW8 444 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 RNF157Q96PX1 679 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 NAP1L3Q99457 506 aaPredicted RBP16.7■□□□□ 0.26
SS18-226ENST00000585241 GKN1Q9NS71 199 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 CWC15Q9P013 229 aaKnown RBP16.7■□□□□ 0.26
SS18-226ENST00000585241 OR12D3Q9UGF7 316 aa16.7■□□□□ 0.26
SS18-226ENST00000585241 DENND4AQ7Z401 1863 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 BRWD1Q9NSI6 2320 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 IGLV3-10A0A075B6K4 115 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 ACSL4O60488 711 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 LRIG2O94898 1065 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 MOCS2O96007 188 aaPredicted RBP16.69■□□□□ 0.26
SS18-226ENST00000585241 CORO1AP31146 461 aaKnown RBP16.69■□□□□ 0.26
SS18-226ENST00000585241 AVPR1AP37288 418 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 ARL4AP40617 200 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 USP4Q13107 963 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 MMRN1Q13201 1228 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 DPYSQ14117 519 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 SIX1Q15475 284 aaPredicted RBP16.69■□□□□ 0.26
SS18-226ENST00000585241 C5orf22Q49AR2 442 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 ANKRD20A8PQ5CZ79 823 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 PPP6R3Q5H9R7 873 aaPredicted RBP16.69■□□□□ 0.26
SS18-226ENST00000585241 ATAT1Q5SQI0 421 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 SLC9A4Q6AI14 798 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 NADSYN1Q6IA69 706 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 CES5AQ6NT32 575 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 BBS12Q6ZW61 710 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 HTR3DQ70Z44 454 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 FAM217AQ8IXS0 508 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 SMRP1Q8NCR6 262 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 PCDH19Q8TAB3 1148 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 MAIP1Q8WWC4 291 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 USP13Q92995 863 aaPredicted RBP16.69■□□□□ 0.26
SS18-226ENST00000585241 CAPZA3Q96KX2 299 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 EPAS1Q99814 870 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 CALN1Q9BXU9 219 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 KIF9Q9HAQ2 790 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 SMPD4Q9NXE4 827 aa16.69■□□□□ 0.26
SS18-226ENST00000585241 LEFTY2O00292 366 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 EEF2KO00418 725 aaKnown RBP16.68■□□□□ 0.26
SS18-226ENST00000585241 GFRA2O00451 464 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 TJP3O95049 919 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 GOT1P17174 413 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 MTHFRP42898 656 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 PAFAH1B1P43034 410 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 SLC11A2P49281 568 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 TFDP2Q14188 446 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 LONRF2Q1L5Z9 754 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 FAM133BQ5BKY9 247 aaKnown RBP16.68■□□□□ 0.26
SS18-226ENST00000585241 HABP4Q5JVS0 413 aaKnown RBP16.68■□□□□ 0.26
SS18-226ENST00000585241 CCDC181Q5TID7 509 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 RFX8Q6ZV50 586 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 ZDHHC14Q8IZN3 488 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 PQLC3Q8N755 202 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 MYLIPQ8WY64 445 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 ING5Q8WYH8 240 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 RIPOR3Q96MK2 946 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 ZSWIM3Q96MP5 696 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 GUCD1Q96NT3 240 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 CDX2Q99626 313 aaPredicted RBP16.68■□□□□ 0.26
SS18-226ENST00000585241 APOL5Q9BWW9 433 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 ARHGEF4Q9NR80 690 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 TDP1Q9NUW8 608 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 GDE1Q9NZC3 331 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 SMARCAL1Q9NZC9 954 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 PPARGC1AQ9UBK2 798 aaKnown RBP16.68■□□□□ 0.26
SS18-226ENST00000585241 CDH22Q9UJ99 828 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 LSM7Q9UK45 103 aaKnown RBP16.68■□□□□ 0.26
SS18-226ENST00000585241 AGO1Q9UL18 857 aaKnown RBP16.68■□□□□ 0.26
SS18-226ENST00000585241 ZNF510Q9Y2H8 683 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 SNX10Q9Y5X0 201 aa16.68■□□□□ 0.26
SS18-226ENST00000585241 DOCK8Q8NF50 2099 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms