RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 SERPINB9P50453 376 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 RASSF2P50749 326 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 ARFIP2P53365 341 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 MDH1BQ5I0G3 518 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 LRRC8BQ6P9F7 803 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 TIFABQ6ZNK6 161 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 SIX6OS1Q8N1H7 587 aa10.39□□□□□ -0.75
VPS53-220ENST00000576149 EIF2B3Q9NR50 452 aaKnown RBP10.39□□□□□ -0.75
VPS53-220ENST00000576149 MTO1Q9Y2Z2 717 aaKnown RBP10.39□□□□□ -0.75
VPS53-220ENST00000576149 SYNJ2BP-COX16A0A087WUM0 186 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 SDR42E2A6NKP2 422 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 RNF103O00237 685 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 DNAJC6O75061 913 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 STK10O94804 968 aaKnown RBP10.38□□□□□ -0.75
VPS53-220ENST00000576149 CCND1P24385 295 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 CRHR1P34998 444 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 DEUP1Q05D60 604 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 AP1B1Q10567 949 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 MTA1Q13330 715 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 DPYSQ14117 519 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 PAFAH1B3Q15102 231 aaKnown RBP10.38□□□□□ -0.75
VPS53-220ENST00000576149 PDK1Q15118 436 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 ZNF449Q6P9G9 518 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 HFE2Q6ZVN8 426 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 TRIM42Q8IWZ5 723 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 DEPDC1BQ8WUY9 529 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 WNT8BQ93098 351 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 MED10Q9BTT4 135 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 SLC13A1Q9BZW2 595 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 PIGVQ9NUD9 493 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 DDX43Q9NXZ2 648 aaKnown RBP10.38□□□□□ -0.75
VPS53-220ENST00000576149 COX16Q9P0S2 106 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 HEY2Q9UBP5 337 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 LNPEPQ9UIQ6 1025 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.38□□□□□ -0.75
VPS53-220ENST00000576149 L3MBTL1Q9Y468 752 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 WDR27A2RRH5 827 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 HNRNPCL1O60812 293 aaKnown RBP10.38□□□□□ -0.75
VPS53-220ENST00000576149 WFS1O76024 890 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 CELF2O95319 508 aaKnown RBP10.38□□□□□ -0.75
VPS53-220ENST00000576149 FYNP06241 537 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 FAM200BP0CF97 657 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 CNTFP26441 200 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 TKTL1P51854 596 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 MAP3K7CLP57077 242 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 PURAQ00577 322 aaKnown RBP10.38□□□□□ -0.75
VPS53-220ENST00000576149 WASHC5Q12768 1159 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 NME3Q13232 169 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 FSCN1Q16658 493 aaKnown RBP10.38□□□□□ -0.75
VPS53-220ENST00000576149 MROH9Q5TGP6 573 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 CCDC91Q7Z6B0 441 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 NDUFAF2Q8N183 169 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 PDCD7Q8N8D1 485 aaKnown RBP10.38□□□□□ -0.75
VPS53-220ENST00000576149 RNF169Q8NCN4 708 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 GSTCDQ8NEC7 633 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 ARMC2Q8NEN0 867 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 SKA1Q96BD8 255 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 SENP8Q96LD8 212 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 SLC9A7Q96T83 725 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 FERMT1Q9BQL6 677 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 TBC1D10AQ9BXI6 508 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 TMEM120AQ9BXJ8 343 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 TSPYL2Q9H2G4 693 aaPredicted RBP10.38□□□□□ -0.75
VPS53-220ENST00000576149 PRDM12Q9H4Q4 367 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 EBF2Q9HAK2 575 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 CRTAC1Q9NQ79 661 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 KRT82Q9NSB4 513 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 SIRPGQ9P1W8 387 aa10.38□□□□□ -0.75
VPS53-220ENST00000576149 MEIS3P2A8K0S8 358 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 F5H423 210 aaPredicted RBP10.37□□□□□ -0.75
VPS53-220ENST00000576149 EEF2KO00418 725 aaKnown RBP10.37□□□□□ -0.75
VPS53-220ENST00000576149 NRP1O14786 923 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 PPP1R12AO14974 1030 aaPredicted RBP10.37□□□□□ -0.75
VPS53-220ENST00000576149 DCLK1O15075 740 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 FBXO21O94952 628 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 CYP2B6P20813 491 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 PTPN4P29074 926 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 NIPAL4Q0D2K0 466 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 TAF2Q6P1X5 1199 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 RFX8Q6ZV50 586 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 MARK2Q7KZI7 788 aaKnown RBP10.37□□□□□ -0.75
VPS53-220ENST00000576149 CCNJLQ8IV13 435 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 NETO2Q8NC67 525 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 CCNYQ8ND76 341 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 ARNTL2Q8WYA1 636 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 NTAN1Q96AB6 310 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 C7orf26Q96N11 449 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 MECRQ9BV79 373 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 TLE6Q9H808 572 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 PCMTD2Q9NV79 361 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 SLC38A7Q9NVC3 462 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 TRIP12Q14669 1992 aaPredicted RBP10.37□□□□□ -0.75
VPS53-220ENST00000576149 C9IYK1 514 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 IGHA2P01877 340 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 RARBP10826 455 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 SERPINB3P29508 390 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 ADRA1BP35368 520 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 LHX1P48742 406 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 AIF1P55008 147 aa10.37□□□□□ -0.75
VPS53-220ENST00000576149 GJA9P57773 515 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms