RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 RNF181Q9P0P0 153 aa23.46■■□□□ 1.35
VPS53-211ENST00000571805 RNF103O00237 685 aa23.45■■□□□ 1.35
VPS53-211ENST00000571805 XPO1O14980 1071 aaKnown RBP23.45■■□□□ 1.35
VPS53-211ENST00000571805 CDC42EP1Q00587 391 aa23.45■■□□□ 1.35
VPS53-211ENST00000571805 CASC4Q6P4E1 433 aa23.45■■□□□ 1.35
VPS53-211ENST00000571805 PACS1Q6VY07 963 aa23.45■■□□□ 1.35
VPS53-211ENST00000571805 BNIPLQ7Z465 357 aa23.45■■□□□ 1.35
VPS53-211ENST00000571805 PIGZQ86VD9 579 aa23.45■■□□□ 1.35
VPS53-211ENST00000571805 APPL2Q8NEU8 664 aa23.45■■□□□ 1.35
VPS53-211ENST00000571805 ACMSDQ8TDX5 336 aa23.45■■□□□ 1.35
VPS53-211ENST00000571805 NT5C3BQ969T7 300 aa23.45■■□□□ 1.35
VPS53-211ENST00000571805 PRDM16Q9HAZ2 1276 aa23.45■■□□□ 1.35
VPS53-211ENST00000571805 THAP1Q9NVV9 213 aa23.45■■□□□ 1.35
VPS53-211ENST00000571805 PIH1D1Q9NWS0 290 aaKnown RBP23.45■■□□□ 1.35
VPS53-211ENST00000571805 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP23.45■■□□□ 1.34
VPS53-211ENST00000571805 B2RBV5 119 aa23.45■■□□□ 1.34
VPS53-211ENST00000571805 OPHN1O60890 802 aa23.45■■□□□ 1.34
VPS53-211ENST00000571805 MGAT1P26572 445 aa23.45■■□□□ 1.34
VPS53-211ENST00000571805 CPA2P48052 419 aa23.45■■□□□ 1.34
VPS53-211ENST00000571805 GLUD2P49448 558 aa23.45■■□□□ 1.34
VPS53-211ENST00000571805 WASHC5Q12768 1159 aa23.45■■□□□ 1.34
VPS53-211ENST00000571805 BLMHQ13867 455 aa23.45■■□□□ 1.34
VPS53-211ENST00000571805 DBN1Q16643 649 aa23.45■■□□□ 1.34
VPS53-211ENST00000571805 C16orf46Q6P387 395 aa23.45■■□□□ 1.34
VPS53-211ENST00000571805 FBXO27Q8NI29 283 aa23.45■■□□□ 1.34
VPS53-211ENST00000571805 CCDC106Q9BWC9 280 aa23.45■■□□□ 1.34
VPS53-211ENST00000571805 RNF39Q9H2S5 420 aa23.45■■□□□ 1.34
VPS53-211ENST00000571805 PDHXO00330 501 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 LUC7L3O95232 432 aaKnown RBP23.44■■□□□ 1.34
VPS53-211ENST00000571805 ENO1P06733 434 aaKnown RBP23.44■■□□□ 1.34
VPS53-211ENST00000571805 ATP6V1C1P21283 382 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 SESN2P58004 480 aaPredicted RBP23.44■■□□□ 1.34
VPS53-211ENST00000571805 SOX4Q06945 474 aaPredicted RBP23.44■■□□□ 1.34
VPS53-211ENST00000571805 FASTKD1Q53R41 847 aaKnown RBP23.44■■□□□ 1.34
VPS53-211ENST00000571805 XKR4Q5GH76 650 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 TMPRSS6Q8IU80 811 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 RNF139Q8WU17 664 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 ZNF560Q96MR9 790 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 GOLGA2P5Q9HBQ8 144 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 XPNPEP3Q9NQH7 507 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 STOML1Q9UBI4 398 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 LIN7AO14910 233 aaPredicted RBP23.44■■□□□ 1.34
VPS53-211ENST00000571805 KRT36O76013 467 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 PGAM1P18669 254 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 PGM1P36871 562 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 RAP1GDS1P52306 607 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 IRX4P78413 519 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 ADIGQ0VDE8 80 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 AP1B1Q10567 949 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 PDE1CQ14123 709 aaPredicted RBP23.44■■□□□ 1.34
VPS53-211ENST00000571805 RCN1Q15293 331 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 PCBP1Q15365 356 aaKnown RBP eCLIP23.44■■□□□ 1.34
VPS53-211ENST00000571805 MBLAC2Q68D91 279 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 CCNJLQ8IV13 435 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 MAML3Q96JK9 1138 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 CEP41Q9BYV8 373 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 PSAT1Q9Y617 370 aa23.44■■□□□ 1.34
VPS53-211ENST00000571805 TPP1O14773 563 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 DAB1O75553 588 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 PSMG1O95456 288 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 KCNE1P15382 129 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 PNPLA4P41247 253 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 TAF6P49848 677 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 DCAF6Q58WW2 860 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 OSTM1Q86WC4 334 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 FAM149B1Q96BN6 582 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 DUSP16Q9BY84 665 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 MAGEC1O60732 1142 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 ATP5BP06576 529 aaKnown RBP23.43■■□□□ 1.34
VPS53-211ENST00000571805 SMIM10L2AP0DMW4 78 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 SMIM10L2BP0DMW5 78 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 FGF3P11487 239 aaPredicted RBP23.43■■□□□ 1.34
VPS53-211ENST00000571805 N4BP2L1Q5TBK1 243 aaPredicted RBP23.43■■□□□ 1.34
VPS53-211ENST00000571805 DPP9Q86TI2 863 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 RBM15BQ8NDT2 890 aaKnown RBP23.43■■□□□ 1.34
VPS53-211ENST00000571805 TMEM40Q8WWA1 233 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 CDKL2Q92772 493 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 ZNF778Q96MU6 729 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 NPY6RQ99463 290 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 HNRNPABQ99729 332 aaKnown RBP23.43■■□□□ 1.34
VPS53-211ENST00000571805 EBF4Q9BQW3 602 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 FAM167BQ9BTA0 163 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 DONSONQ9NYP3 566 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 TAGLN3Q9UI15 199 aa23.43■■□□□ 1.34
VPS53-211ENST00000571805 SMIM35A0A1B0GVV1 85 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 H3BRJ5 948 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 PSMB4P28070 264 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 B3GALNT2Q8NCR0 500 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 ZC3H15Q8WU90 426 aaKnown RBP23.42■■□□□ 1.34
VPS53-211ENST00000571805 NRG4Q8WWG1 115 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 SLC10A4Q96EP9 437 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 TNIP3Q96KP6 325 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 PLA2G4CQ9UP65 541 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 SF3B1O75533 1304 aaKnown RBP eCLIP23.42■■□□□ 1.341e-10■■■■■ 107
VPS53-211ENST00000571805 MBLAC1A4D2B0 266 aaPredicted RBP23.42■■□□□ 1.34
VPS53-211ENST00000571805 ITM2AO43736 263 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 PLIN3O60664 434 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 GLRA3O75311 464 aa23.42■■□□□ 1.34
VPS53-211ENST00000571805 SMNDC1O75940 238 aaKnown RBP eCLIP23.42■■□□□ 1.34
VPS53-211ENST00000571805 BEST1O76090 585 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms