RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	NCEH1	Q6PIU2	408 aa		12.33	□□□□□ -0.44
CLK3-222	ENST00000568232	ACOT1	Q86TX2	421 aa		12.33	□□□□□ -0.44
CLK3-222	ENST00000568232	SLC2A14	Q8TDB8	520 aa		12.33	□□□□□ -0.44
CLK3-222	ENST00000568232	GANC	Q8TET4	914 aa		12.33	□□□□□ -0.44
CLK3-222	ENST00000568232	DDI1	Q8WTU0	396 aa		12.33	□□□□□ -0.44
CLK3-222	ENST00000568232	SKA1	Q96BD8	255 aa		12.33	□□□□□ -0.44
CLK3-222	ENST00000568232	DNAJC19	Q96DA6	116 aa		12.33	□□□□□ -0.44
CLK3-222	ENST00000568232	VCPIP1	Q96JH7	1222 aa		12.33	□□□□□ -0.44
CLK3-222	ENST00000568232	DPH1	Q9BZG8	443 aa		12.33	□□□□□ -0.44
CLK3-222	ENST00000568232	SDCBP2	Q9H190	292 aa		12.33	□□□□□ -0.44
CLK3-222	ENST00000568232	XYLT2	Q9H1B5	865 aa		12.33	□□□□□ -0.44
CLK3-222	ENST00000568232	CSNK1G1	Q9HCP0	422 aa		12.33	□□□□□ -0.44
CLK3-222	ENST00000568232	SEL1L	Q9UBV2	794 aa		12.33	□□□□□ -0.44
CLK3-222	ENST00000568232	SCML2	Q9UQR0	700 aa		12.33	□□□□□ -0.44
CLK3-222	ENST00000568232	USP9X	Q93008	2570 aa	Predicted RBP	12.33	□□□□□ -0.44
CLK3-222	ENST00000568232	BSN	Q9UPA5	3926 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	NBPF19	A0A087WUL8	3843 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	TLR4	O00206	839 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	TRIM38	O00635	465 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	YKT6	O15498	198 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	SDC3	O75056	442 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	DXO	O77932	396 aa	Known RBP	12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	GAP43	P17677	238 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	CORO1A	P31146	461 aa	Known RBP	12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	NXPH1	P58417	271 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	ZBTB16	Q05516	673 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	E2F5	Q15329	346 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	TTC31	Q49AM3	519 aa	Predicted RBP	12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	KLHDC10	Q6PID8	442 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	SCARA5	Q6ZMJ2	495 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	SCD5	Q86SK9	330 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	SPATS2	Q86XZ4	545 aa	Known RBP	12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	DENND1C	Q8IV53	801 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	ZC3H3	Q8IXZ2	948 aa	Known RBP	12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	ZNF516	Q92618	1163 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	CCDC127	Q96BQ5	260 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	EPSTI1	Q96J88	318 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	GZF1	Q9H116	711 aa	Predicted RBP	12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	ASCL3	Q9NQ33	180 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	ANKMY1	Q9P2S6	941 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	RASAL2	Q9UJF2	1139 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	NAGPA	Q9UK23	515 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	PLA2G4C	Q9UP65	541 aa		12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	UTP20	O75691	2785 aa	Known RBP	12.32	□□□□□ -0.44
CLK3-222	ENST00000568232	RELN	P78509	3460 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	TP53BP1	Q12888	1972 aa	Predicted RBP	12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	HHLA1	C9JL84	531 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	SIGLEC6	O43699	453 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	CYBB	P04839	570 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	MYF5	P13349	255 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	IDE	P14735	1019 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	HLA-F	P30511	346 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	RXRG	P48443	463 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	LSS	P48449	732 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	ERVPABLB-1	P60509	514 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	FOXK1	P85037	733 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	E2F1	Q01094	437 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	CHST9	Q7L1S5	443 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	LSMEM2	Q8N112	164 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	C12orf29	Q8N999	325 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	TNIP3	Q96KP6	325 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	SLC2A11	Q9BYW1	496 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	NEUROG2	Q9H2A3	272 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	PABPC3	Q9H361	631 aa	Known RBP	12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	POLR1B	Q9H9Y6	1135 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	OLFML3	Q9NRN5	406 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	FAM49B	Q9NUQ9	324 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	FBXL12	Q9NXK8	326 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	HSPBP1	Q9NZL4	362 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	HMGXB4	Q9UGU5	601 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	NCKAP1	Q9Y2A7	1128 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232	ZNF510	Q9Y2H8	683 aa		12.31	□□□□□ -0.44
CLK3-222	ENST00000568232		A0A1W2PP55	124 aa		12.3	□□□□□ -0.44
CLK3-222	ENST00000568232	ADORA2B	P29275	332 aa		12.3	□□□□□ -0.44
CLK3-222	ENST00000568232	LONP1	P36776	959 aa	Known RBP	12.3	□□□□□ -0.44
CLK3-222	ENST00000568232	EHHADH	Q08426	723 aa		12.3	□□□□□ -0.44
CLK3-222	ENST00000568232	EFEMP1	Q12805	493 aa		12.3	□□□□□ -0.44
CLK3-222	ENST00000568232	TRPC3	Q13507	836 aa		12.3	□□□□□ -0.44
CLK3-222	ENST00000568232	CDCP2	Q5VXM1	449 aa		12.3	□□□□□ -0.44
CLK3-222	ENST00000568232	ZNF776	Q68DI1	518 aa	Predicted RBP	12.3	□□□□□ -0.44
CLK3-222	ENST00000568232	ZNF574	Q6ZN55	896 aa	Predicted RBP	12.3	□□□□□ -0.44
CLK3-222	ENST00000568232	CLEC20A	Q6ZU45	233 aa		12.3	□□□□□ -0.44
CLK3-222	ENST00000568232	ADIPOR2	Q86V24	386 aa		12.3	□□□□□ -0.44
CLK3-222	ENST00000568232	SERAC1	Q96JX3	654 aa		12.3	□□□□□ -0.44
CLK3-222	ENST00000568232	CGRRF1	Q99675	332 aa		12.3	□□□□□ -0.44
CLK3-222	ENST00000568232	OSBPL2	Q9H1P3	480 aa		12.3	□□□□□ -0.44
CLK3-222	ENST00000568232	CAAP1	Q9H8G2	361 aa		12.3	□□□□□ -0.44
CLK3-222	ENST00000568232	ABCB8	Q9NUT2	735 aa		12.3	□□□□□ -0.44
CLK3-222	ENST00000568232		A0A1W2PNU3	283 aa	Predicted RBP	12.29	□□□□□ -0.44
CLK3-222	ENST00000568232	KIAA0391	O15091	583 aa	Known RBP	12.29	□□□□□ -0.44
CLK3-222	ENST00000568232	MID1	O15344	667 aa		12.29	□□□□□ -0.44
CLK3-222	ENST00000568232	OPA1	O60313	960 aa		12.29	□□□□□ -0.44
CLK3-222	ENST00000568232	CS	O75390	466 aa	Known RBP	12.29	□□□□□ -0.44
CLK3-222	ENST00000568232	RNASEH2A	O75792	299 aa	Known RBP	12.29	□□□□□ -0.44
CLK3-222	ENST00000568232	CLSTN1	O94985	981 aa		12.29	□□□□□ -0.44
CLK3-222	ENST00000568232	STAU1	O95793	577 aa	Known RBP	12.29	□□□□□ -0.44
CLK3-222	ENST00000568232	HOXD9	P28356	352 aa	Predicted RBP	12.29	□□□□□ -0.44
CLK3-222	ENST00000568232	HOXD13	P35453	343 aa		12.29	□□□□□ -0.44
CLK3-222	ENST00000568232	COG7	P83436	770 aa		12.29	□□□□□ -0.44
CLK3-222	ENST00000568232	DAB2	P98082	770 aa		12.29	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms