RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 LYSMD4Q5XG99 296 aa21.54■■□□□ 1.04
CLN3-219ENST00000565778 SERPINA13PQ6UXR4 307 aa21.54■■□□□ 1.04
CLN3-219ENST00000565778 CHST9Q7L1S5 443 aa21.54■■□□□ 1.04
CLN3-219ENST00000565778 SYT12Q8IV01 421 aa21.54■■□□□ 1.04
CLN3-219ENST00000565778 WFIKKN2Q8TEU8 576 aa21.54■■□□□ 1.04
CLN3-219ENST00000565778 DDX1Q92499 740 aaKnown RBP21.54■■□□□ 1.04
CLN3-219ENST00000565778 PPP1R13BQ96KQ4 1090 aa21.54■■□□□ 1.04
CLN3-219ENST00000565778 LHX5Q9H2C1 402 aa21.54■■□□□ 1.04
CLN3-219ENST00000565778 PRDM16Q9HAZ2 1276 aa21.54■■□□□ 1.04
CLN3-219ENST00000565778 GGA2Q9UJY4 613 aa21.54■■□□□ 1.04
CLN3-219ENST00000565778 PCDHGC3Q9UN70 934 aa21.54■■□□□ 1.04
CLN3-219ENST00000565778 THADAQ6YHU6 1953 aa21.54■■□□□ 1.04
CLN3-219ENST00000565778 MOCS2O96007 188 aaPredicted RBP21.53■■□□□ 1.04
CLN3-219ENST00000565778 EPHX1P07099 455 aa21.53■■□□□ 1.04
CLN3-219ENST00000565778 KCNA4P22459 653 aa21.53■■□□□ 1.04
CLN3-219ENST00000565778 CLCN1P35523 988 aa21.53■■□□□ 1.04
CLN3-219ENST00000565778 BPIFB4P59827 614 aa21.53■■□□□ 1.04
CLN3-219ENST00000565778 IRX4P78413 519 aa21.53■■□□□ 1.04
CLN3-219ENST00000565778 NNTQ13423 1086 aa21.53■■□□□ 1.04
CLN3-219ENST00000565778 ENPP2Q13822 863 aa21.53■■□□□ 1.04
CLN3-219ENST00000565778 RAPGEF1Q13905 1077 aa21.53■■□□□ 1.04
CLN3-219ENST00000565778 TAF5Q15542 800 aa21.53■■□□□ 1.04
CLN3-219ENST00000565778 SMYD5Q6GMV2 418 aa21.53■■□□□ 1.04
CLN3-219ENST00000565778 NADSYN1Q6IA69 706 aa21.53■■□□□ 1.04
CLN3-219ENST00000565778 TAC4Q86UU9 113 aa21.53■■□□□ 1.04
CLN3-219ENST00000565778 SLC39A13Q96H72 371 aa21.53■■□□□ 1.04
CLN3-219ENST00000565778 NOX5Q96PH1 765 aa21.53■■□□□ 1.04
CLN3-219ENST00000565778 CPXM1Q96SM3 734 aa21.53■■□□□ 1.04
CLN3-219ENST00000565778 EDEM2Q9BV94 578 aa21.53■■□□□ 1.04
CLN3-219ENST00000565778 PDCL3Q9H2J4 239 aa21.53■■□□□ 1.04
CLN3-219ENST00000565778 TMEM74BQ9NUR3 256 aa21.53■■□□□ 1.04
CLN3-219ENST00000565778 TJP2Q9UDY2 1190 aa21.53■■□□□ 1.04
CLN3-219ENST00000565778 TYW5A2RUC4 315 aaKnown RBP21.52■■□□□ 1.04
CLN3-219ENST00000565778 NDUFS2O75306 463 aa21.52■■□□□ 1.04
CLN3-219ENST00000565778 TRUB2O95900 331 aaKnown RBP21.52■■□□□ 1.04
CLN3-219ENST00000565778 PNMA6AP0CW24 399 aaPredicted RBP21.52■■□□□ 1.04
CLN3-219ENST00000565778 PABPC1P11940 636 aaKnown RBP21.52■■□□□ 1.04
CLN3-219ENST00000565778 ITPKAP23677 461 aa21.52■■□□□ 1.04
CLN3-219ENST00000565778 SNX16P57768 344 aa21.52■■□□□ 1.04
CLN3-219ENST00000565778 KCNMA1Q12791 1236 aa21.52■■□□□ 1.04
CLN3-219ENST00000565778 FNDC3BQ53EP0 1204 aaKnown RBP21.52■■□□□ 1.04
CLN3-219ENST00000565778 DCAF6Q58WW2 860 aa21.52■■□□□ 1.04
CLN3-219ENST00000565778 ZC3H12AQ5D1E8 599 aaKnown RBP21.52■■□□□ 1.04
CLN3-219ENST00000565778 TCP11X2Q5H9J9 407 aa21.52■■□□□ 1.04
CLN3-219ENST00000565778 PPM1JQ5JR12 505 aa21.52■■□□□ 1.04
CLN3-219ENST00000565778 EFHC1Q5JVL4 640 aa21.52■■□□□ 1.04
CLN3-219ENST00000565778 OR6B2Q6IFH4 312 aa21.52■■□□□ 1.04
CLN3-219ENST00000565778 SLC47A2Q86VL8 602 aa21.52■■□□□ 1.04
CLN3-219ENST00000565778 TMPRSS6Q8IU80 811 aa21.52■■□□□ 1.04
CLN3-219ENST00000565778 CCDC117Q8IWD4 279 aaPredicted RBP21.52■■□□□ 1.04
CLN3-219ENST00000565778 AHI1Q8N157 1196 aa21.52■■□□□ 1.04
CLN3-219ENST00000565778 CYB5D2Q8WUJ1 264 aa21.52■■□□□ 1.04
CLN3-219ENST00000565778 SLC12A6Q9UHW9 1150 aa21.52■■□□□ 1.04
CLN3-219ENST00000565778 NFE2L3Q9Y4A8 694 aa21.52■■□□□ 1.04
CLN3-219ENST00000565778 LNP1A1A4G5 178 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 C4orf47A7E2U8 309 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 GOLGA6L22H0YM25 854 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 APOEP02649 317 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 ATP5BP06576 529 aaKnown RBP21.51■■□□□ 1.03
CLN3-219ENST00000565778 POLR2EP19388 210 aaKnown RBP21.51■■□□□ 1.03
CLN3-219ENST00000565778 PRKCHP24723 683 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 EEF1GP26641 437 aaKnown RBP21.51■■□□□ 1.03
CLN3-219ENST00000565778 DPP6P42658 865 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 CDK17Q00537 523 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 ZNF33AQ06730 810 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 DRAP1Q14919 205 aaPredicted RBP21.51■■□□□ 1.03
CLN3-219ENST00000565778 TRIM61Q5EBN2 209 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 KLHDC7AQ5VTJ3 777 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 MBLAC2Q68D91 279 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 KIAA0907Q7Z7F0 614 aaPredicted RBP21.51■■□□□ 1.03
CLN3-219ENST00000565778 ADIPOR2Q86V24 386 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 MFN1Q8IWA4 741 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 FAM71AQ8IYT1 594 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 CARNMT1Q8N4J0 409 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 ZNF557Q8N988 423 aaPredicted RBP21.51■■□□□ 1.03
CLN3-219ENST00000565778 HJURPQ8NCD3 748 aaPredicted RBP21.51■■□□□ 1.03
CLN3-219ENST00000565778 ENOX1Q8TC92 643 aaKnown RBP21.51■■□□□ 1.03
CLN3-219ENST00000565778 GPT2Q8TD30 523 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 PRCCQ92733 491 aaPredicted RBP21.51■■□□□ 1.03
CLN3-219ENST00000565778 SIPA1Q96FS4 1042 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 NUSAP1Q9BXS6 441 aaKnown RBP21.51■■□□□ 1.03
CLN3-219ENST00000565778 MKRN2Q9H000 416 aaKnown RBP21.51■■□□□ 1.03
CLN3-219ENST00000565778 NUCKS1Q9H1E3 243 aaKnown RBP21.51■■□□□ 1.03
CLN3-219ENST00000565778 SYNCQ9H7C4 482 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 ITM2CQ9NQX7 267 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 CEP83Q9Y592 693 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 DNAH14Q0VDD8 3507 aa21.51■■□□□ 1.03
CLN3-219ENST00000565778 TM4SF5O14894 197 aa21.5■■□□□ 1.03
CLN3-219ENST00000565778 GLI1P08151 1106 aa21.5■■□□□ 1.03
CLN3-219ENST00000565778 ACADMP11310 421 aa21.5■■□□□ 1.03
CLN3-219ENST00000565778 CD70P32970 193 aa21.5■■□□□ 1.03
CLN3-219ENST00000565778 RPS24P62847 133 aaKnown RBP21.5■■□□□ 1.03
CLN3-219ENST00000565778 MS4A13Q5J8X5 152 aa21.5■■□□□ 1.03
CLN3-219ENST00000565778 DPY19L2P1Q6NXN4 242 aa21.5■■□□□ 1.03
CLN3-219ENST00000565778 C11orf57Q6ZUT1 292 aaPredicted RBP21.5■■□□□ 1.03
CLN3-219ENST00000565778 METTL3Q86U44 580 aaKnown RBP21.5■■□□□ 1.03
CLN3-219ENST00000565778 DEFB106AQ8N104 65 aa21.5■■□□□ 1.03
CLN3-219ENST00000565778 CFAP52Q8N1V2 620 aa21.5■■□□□ 1.03
CLN3-219ENST00000565778 DDX51Q8N8A6 666 aaKnown RBP eCLIP21.5■■□□□ 1.03
CLN3-219ENST00000565778 ATP6V0D2Q8N8Y2 350 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms