RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 PRKCHP24723 683 aa15.46■□□□□ 0.07
CLN3-213ENST00000565047 DHPSP49366 369 aaPredicted RBP15.46■□□□□ 0.07
CLN3-213ENST00000565047 YWHAZP63104 245 aaKnown RBP15.46■□□□□ 0.07
CLN3-213ENST00000565047 IRX4P78413 519 aa15.46■□□□□ 0.07
CLN3-213ENST00000565047 PTPRNQ16849 979 aa15.46■□□□□ 0.07
CLN3-213ENST00000565047 SLC41A1Q8IVJ1 513 aa15.46■□□□□ 0.07
CLN3-213ENST00000565047 ADAM32Q8TC27 787 aa15.46■□□□□ 0.07
CLN3-213ENST00000565047 ITM2CQ9NQX7 267 aa15.46■□□□□ 0.07
CLN3-213ENST00000565047 ST7Q9NRC1 585 aa15.46■□□□□ 0.07
CLN3-213ENST00000565047 USP36Q9P275 1121 aaKnown RBP15.46■□□□□ 0.07
CLN3-213ENST00000565047 XPO7Q9UIA9 1087 aaKnown RBP15.46■□□□□ 0.07
CLN3-213ENST00000565047 DNAJC12Q9UKB3 198 aa15.46■□□□□ 0.07
CLN3-213ENST00000565047 CKAP5Q14008 2032 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 ZNF217O75362 1048 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 IGLV3-19P01714 112 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 ITPKAP23677 461 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 CD70P32970 193 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 SLC11A2P49281 568 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 HSP90AA4PQ58FG1 418 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 SLC23A3Q6PIS1 610 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 SLC36A4Q6YBV0 504 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 CYP2U1Q7Z449 544 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 SLC47A2Q86VL8 602 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 SYT12Q8IV01 421 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 UCMAQ8WVF2 138 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 GOLGA1Q92805 767 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 MYO19Q96H55 970 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 ZNF419Q96HQ0 510 aaPredicted RBP15.45■□□□□ 0.06
CLN3-213ENST00000565047 SERPINB11Q96P15 392 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 SLC2A13Q96QE2 648 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 LSM14BQ9BX40 385 aaKnown RBP15.45■□□□□ 0.06
CLN3-213ENST00000565047 NUCKS1Q9H1E3 243 aaKnown RBP15.45■□□□□ 0.06
CLN3-213ENST00000565047 POPDC2Q9HBU9 364 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 ABCB8Q9NUT2 735 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 GGA2Q9UJY4 613 aa15.45■□□□□ 0.06
CLN3-213ENST00000565047 INTS6Q9UL03 887 aaKnown RBP15.45■□□□□ 0.06
CLN3-213ENST00000565047 KCNU1A8MYU2 1149 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 KCNJ18B7U540 433 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 KHNYNO15037 678 aaKnown RBP15.44■□□□□ 0.06
CLN3-213ENST00000565047 MAP3K13O43283 966 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 TBL1XO60907 577 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 ADRB1P08588 477 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 CAMK2GQ13555 558 aaPredicted RBP15.44■□□□□ 0.06
CLN3-213ENST00000565047 PTPN20Q4JDL3 420 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 TCP11X2Q5H9J9 407 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 MS4A13Q5J8X5 152 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 PPM1JQ5JR12 505 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 KLHDC7AQ5VTJ3 777 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 CDKAL1Q5VV42 579 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 LYSMD4Q5XG99 296 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 ARMCX6Q7L4S7 300 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 FAM114A1Q8IWE2 563 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 DEFB119Q8N690 84 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 FIBINQ8TAL6 211 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 ENOX1Q8TC92 643 aaKnown RBP15.44■□□□□ 0.06
CLN3-213ENST00000565047 WFIKKN2Q8TEU8 576 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 DDX1Q92499 740 aaKnown RBP15.44■□□□□ 0.06
CLN3-213ENST00000565047 PIGKQ92643 395 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 FAM149B1Q96BN6 582 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 EDEM2Q9BV94 578 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 ADAM33Q9BZ11 813 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 CIPCQ9C0C6 399 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 ASNSD1Q9NWL6 643 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 CYP8B1Q9UNU6 501 aa15.44■□□□□ 0.06
CLN3-213ENST00000565047 SPTBN2O15020 2390 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 AP5Z1O43299 807 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 TRUB2O95900 331 aaKnown RBP15.43■□□□□ 0.06
CLN3-213ENST00000565047 ERBB2P04626 1255 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 GLI1P08151 1106 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 PABPC1P11940 636 aaKnown RBP15.43■□□□□ 0.06
CLN3-213ENST00000565047 CDH5P33151 784 aaPredicted RBP15.43■□□□□ 0.06
CLN3-213ENST00000565047 HOXD12P35452 270 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 ANP32AP39687 249 aaKnown RBP15.43■□□□□ 0.06
CLN3-213ENST00000565047 USP8P40818 1118 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 RPS24P62847 133 aaKnown RBP15.43■□□□□ 0.06
CLN3-213ENST00000565047 RPL6Q02878 288 aaKnown RBP15.43■□□□□ 0.06
CLN3-213ENST00000565047 PTK2Q05397 1052 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 ZNF33AQ06730 810 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 KCNJ12Q14500 433 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 TPD52L1Q16890 204 aaPredicted RBP15.43■□□□□ 0.06
CLN3-213ENST00000565047 ZC3H12AQ5D1E8 599 aaKnown RBP15.43■□□□□ 0.06
CLN3-213ENST00000565047 FSCBQ5H9T9 825 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 OLFML1Q6UWY5 402 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 CHST9Q7L1S5 443 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 TMPRSS6Q8IU80 811 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 PASD1Q8IV76 773 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 AHI1Q8N157 1196 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 CYB5D2Q8WUJ1 264 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 TTC17Q96AE7 1141 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 PPP1R13BQ96KQ4 1090 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 PRMT1Q99873 361 aaKnown RBP15.43■□□□□ 0.06
CLN3-213ENST00000565047 TRIM62Q9BVG3 475 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 PRDM16Q9HAZ2 1276 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 WSB2Q9NYS7 404 aaPredicted RBP15.43■□□□□ 0.06
CLN3-213ENST00000565047 DACH1Q9UI36 760 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 FHOD1Q9Y613 1164 aa15.43■□□□□ 0.06
CLN3-213ENST00000565047 C4orf47A7E2U8 309 aa15.42■□□□□ 0.06
CLN3-213ENST00000565047 DLDP09622 509 aaKnown RBP15.42■□□□□ 0.06
CLN3-213ENST00000565047 HLA-EP13747 358 aa15.42■□□□□ 0.06
CLN3-213ENST00000565047 PRKCSHP14314 528 aaPredicted RBP15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms