RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 GAB3Q8WWW8 586 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 PIWIL1Q96J94 861 aaKnown RBP13.9□□□□□ -0.18
CLK3-213ENST00000563842 HINFPQ9BQA5 517 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 CBX8Q9HC52 389 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 DDIT4Q9NX09 232 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.9□□□□□ -0.18
CLK3-213ENST00000563842 NCDNQ9UBB6 729 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 GMEB2Q9UKD1 530 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 PAXBP1Q9Y5B6 917 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 ABCA7Q8IZY2 2146 aa13.9□□□□□ -0.18
CLK3-213ENST00000563842 A0A1B0GTH6 734 aa13.89□□□□□ -0.19
CLK3-213ENST00000563842 PRRT4C9JH25 899 aa13.89□□□□□ -0.19
CLK3-213ENST00000563842 TEX33O43247 280 aa13.89□□□□□ -0.19
CLK3-213ENST00000563842 HRO43593 1189 aa13.89□□□□□ -0.19
CLK3-213ENST00000563842 TBL1XO60907 577 aa13.89□□□□□ -0.19
CLK3-213ENST00000563842 GRAP2O75791 330 aa13.89□□□□□ -0.19
CLK3-213ENST00000563842 RPP40O75818 363 aaKnown RBP13.89□□□□□ -0.19
CLK3-213ENST00000563842 MOCS2O96007 188 aaPredicted RBP13.89□□□□□ -0.19
CLK3-213ENST00000563842 HOXB2P14652 356 aa13.89□□□□□ -0.19
CLK3-213ENST00000563842 PXNP49023 591 aaPredicted RBP13.89□□□□□ -0.19
CLK3-213ENST00000563842 RNASE9P60153 205 aaKnown RBP13.89□□□□□ -0.19
CLK3-213ENST00000563842 FMO1Q01740 532 aa13.89□□□□□ -0.19
CLK3-213ENST00000563842 EIF4EBP2Q13542 120 aaPredicted RBP13.89□□□□□ -0.19
CLK3-213ENST00000563842 BYSLQ13895 437 aaKnown RBP13.89□□□□□ -0.19
CLK3-213ENST00000563842 ZSCAN23Q3MJ62 389 aa13.89□□□□□ -0.19
CLK3-213ENST00000563842 USP39Q53GS9 565 aaKnown RBP13.89□□□□□ -0.19
CLK3-213ENST00000563842 FAM133BQ5BKY9 247 aaKnown RBP13.89□□□□□ -0.19
CLK3-213ENST00000563842 ZC3H12AQ5D1E8 599 aaKnown RBP13.89□□□□□ -0.19
CLK3-213ENST00000563842 FAM102AQ5T9C2 384 aaPredicted RBP13.89□□□□□ -0.19
CLK3-213ENST00000563842 LAIR1Q6GTX8 287 aa13.89□□□□□ -0.19
CLK3-213ENST00000563842 ARCQ7LC44 396 aa13.89□□□□□ -0.19
CLK3-213ENST00000563842 RASSF3Q86WH2 238 aa13.89□□□□□ -0.19
CLK3-213ENST00000563842 XYLT1Q86Y38 959 aa13.89□□□□□ -0.19
CLK3-213ENST00000563842 GPR161Q8N6U8 529 aaKnown RBP13.89□□□□□ -0.19
CLK3-213ENST00000563842 SLC20A1Q8WUM9 679 aa13.89□□□□□ -0.19
CLK3-213ENST00000563842 CPA5Q8WXQ8 436 aa13.89□□□□□ -0.19
CLK3-213ENST00000563842 CKAP5Q14008 2032 aa13.89□□□□□ -0.19
CLK3-213ENST00000563842 NUP205Q92621 2012 aa13.89□□□□□ -0.19
CLK3-213ENST00000563842 CACNA1GO43497 2377 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 SYNJ2BP-COX16A0A087WUM0 186 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 GOLGA6L7A0A1B0GV03 622 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 KCNU1A8MYU2 1149 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 M0QYT0 321 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 CHRM1P11229 460 aaPredicted RBP13.88□□□□□ -0.19
CLK3-213ENST00000563842 MMP8P22894 467 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 SLC6A4P31645 630 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 NSFP46459 744 aaKnown RBP13.88□□□□□ -0.19
CLK3-213ENST00000563842 NME3Q13232 169 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 GEN1Q17RS7 908 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 MS4A13Q5J8X5 152 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 BRMS1LQ5PSV4 323 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 ACBD5Q5T8D3 534 aaPredicted RBP13.88□□□□□ -0.19
CLK3-213ENST00000563842 EGFLAMQ63HQ2 1017 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 ANO7Q6IWH7 933 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 PPP1R2P3Q6NXS1 205 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 RFWD3Q6PCD5 774 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 TMEM92Q6UXU6 159 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.88□□□□□ -0.19
CLK3-213ENST00000563842 LUZP1Q86V48 1076 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 CHSY1Q86X52 802 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 AHI1Q8N157 1196 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 GABRG3Q99928 467 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 NUP58Q9BVL2 599 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 EDEM3Q9BZQ6 932 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 POLR3BQ9NW08 1133 aaPredicted RBP13.88□□□□□ -0.19
CLK3-213ENST00000563842 ELOVL2Q9NXB9 296 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 COX16Q9P0S2 106 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 BCCIPQ9P287 314 aaKnown RBP eCLIP13.88□□□□□ -0.19
CLK3-213ENST00000563842 DOCK4Q8N1I0 1966 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 MYO15AQ9UKN7 3530 aa13.88□□□□□ -0.19
CLK3-213ENST00000563842 CACNA1BQ00975 2339 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 SPTBN4Q9H254 2564 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 F5H5T6 163 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 ADAM23O75077 832 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 CALB1P05937 261 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 ATP5BP06576 529 aaKnown RBP13.87□□□□□ -0.19
CLK3-213ENST00000563842 CHRNB2P17787 502 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 TACR2P21452 398 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 SULT1E1P49888 294 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 UBASH3AP57075 661 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 PITX1P78337 314 aaPredicted RBP13.87□□□□□ -0.19
CLK3-213ENST00000563842 FANCCQ00597 558 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 STARD3Q14849 445 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 NR1I3Q14994 352 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 SLC25A52Q3SY17 297 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 RABGAP1LQ5R372 815 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 TTC39BQ5VTQ0 682 aaPredicted RBP13.87□□□□□ -0.19
CLK3-213ENST00000563842 RNF43Q68DV7 783 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 NADSYN1Q6IA69 706 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 MFN1Q8IWA4 741 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 PGBD3Q8N328 593 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.87□□□□□ -0.19
CLK3-213ENST00000563842 FIBINQ8TAL6 211 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 IQCDQ96DY2 449 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 PGAP3Q96FM1 320 aaPredicted RBP13.87□□□□□ -0.19
CLK3-213ENST00000563842 LOXL4Q96JB6 756 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 NAP1L5Q96NT1 182 aaPredicted RBP13.87□□□□□ -0.19
CLK3-213ENST00000563842 PPP1R9BQ96SB3 815 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 NPY6RQ99463 290 aa13.87□□□□□ -0.19
CLK3-213ENST00000563842 AGPAT1Q99943 283 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms